Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G12_e671_14.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   181   2e-46
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    28   3.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   5.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   6.8  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   6.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   9.0  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  181 bits (441), Expect = 2e-46
 Identities = 95/199 (47%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
 Frame = +1

Query: 187 IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 366
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 367 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 546
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 547 -KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSI 723
            K  +  KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R+ 
Sbjct: 128 RKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAY 185

Query: 724 AKLVGIRAKRLKDAAENPD 780
           A+  G RA   K  AE  +
Sbjct: 186 ARYAGARAAFQKKRAEEAE 204


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 168 HFKRFT*NKYMKNKIATQYSF 106
           HFKRFT N +  +KI+ Q S+
Sbjct: 332 HFKRFTFNGFQSSKISKQISY 352


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
 Frame = +1

Query: 643 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE----NPDDV-------- 786
           P     P  E+E      +YL   +S AK VG   ++L++A +     P+++        
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSA 220

Query: 787 TKAPTAVKETKPEK*LL 837
           ++  +A KE+KP+K LL
Sbjct: 221 SQKKSAAKESKPKKVLL 237


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 565 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 678
           + E N ++ +  TQ +    PV+++ PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 288 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 166
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 682 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 774
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,552,873
Number of Sequences: 5004
Number of extensions: 80859
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)