Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G12_e671_14.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   199   4e-51
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   197   2e-50
03_02_0765 + 11000724-11002496                                         31   1.8  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  199 bits (486), Expect = 4e-51
 Identities = 99/202 (49%), Positives = 134/202 (66%), Gaps = 2/202 (0%)
 Frame = +1

Query: 166 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 345
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 346 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 525
            T++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 526 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQ 699
           A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T+D K FKAY 
Sbjct: 121 AKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYA 180

Query: 700 YLRGARSIAKLVGIRAKRLKDA 765
            LR  R   + +G R KR  +A
Sbjct: 181 KLRVERMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  197 bits (480), Expect = 2e-50
 Identities = 98/202 (48%), Positives = 134/202 (66%), Gaps = 2/202 (0%)
 Frame = +1

Query: 166 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 345
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 346 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 525
            T++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 526 ARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQ 699
           A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +SV    +T++ K FKAY 
Sbjct: 121 AKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYA 180

Query: 700 YLRGARSIAKLVGIRAKRLKDA 765
            LR  R   + VG R KR  +A
Sbjct: 181 KLRVERMNQRHVGARQKRAAEA 202


>03_02_0765 + 11000724-11002496
          Length = 590

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = -3

Query: 1460 GPPXXGXGXGXXXXGGXGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXGXXPXFGXPX 1281
            G    G G G    GG G  K G       G  G    G     GG    G    FG   
Sbjct: 504  GGAGGGLGGGAGAGGGFGGGKGGGFGGGLGGSSGSGFGG-GFGAGGGAGGGAGAGFGGGA 562

Query: 1280 XXGGPXAXXXGFPXGXRFXG 1221
              GG      G   G  F G
Sbjct: 563  GAGGGGGLGAGGGGGGGFGG 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,960,820
Number of Sequences: 37544
Number of extensions: 679931
Number of successful extensions: 1563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)