Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G12_e671_14.seq
         (1528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             208   1e-53
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   33   0.60 
SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)                       30   5.6  
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)                  29   9.8  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  208 bits (507), Expect = 1e-53
 Identities = 101/192 (52%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
 Frame = +1

Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRP+VRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
            +Y+TKVRAGRGFTL E++A+G+    A TIGIAVD RR+N+S ESLQ NVQRLKEY+++
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123

Query: 532 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
           LI+FP K  K  +G++   +   A QL+GP+MP+ Q +    ARPITEDEK   + +   
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSASSRQCE 183

Query: 709 GARSI-AKLVGI 741
            +  +  KLVG+
Sbjct: 184 SSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 448 IAVDPRRRNKSVESLQINVQRLKEYRARLILFPKGKKVLKGEANEEERKLATQ 606
           IA+  R    + +     + R++E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_41997| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 532

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 12/28 (42%), Positives = 23/28 (82%)
 Frame = -2

Query: 576 SFTLQYLLALREKNKTSSIFLQPLNINL 493
           +F+LQ L ++R + +T ++FL+P+NI+L
Sbjct: 129 TFSLQSLYSIRCQMRTRNLFLKPVNISL 156


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -1

Query: 373 ELLYDNAQ*GNEQRVLEGQPQDEEQQL*PFLFYSA--FYDDDELAD*TMSS-QIFANPYG 203
           E + + AQ   E R  +   Q+EE+Q+   L  S    +DDDE++D +M S  + A P G
Sbjct: 391 ENIEEAAQKYTELRRQKEGDQEEEEQIKKVLAESRSQVHDDDEMSDESMDSMDVDARPQG 450

Query: 202 NG 197
            G
Sbjct: 451 KG 452


>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
          Length = 248

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = -3

Query: 1445 GXGXGXXXXGGXGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXG 1308
            G G G    GG G  + G      RGG G    G     GGS   G
Sbjct: 196  GGGYGGSSRGGYGGGRGGGGYGGGRGGGGGYGGGRRDYGGGSKGGG 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,546,455
Number of Sequences: 59808
Number of extensions: 665523
Number of successful extensions: 1576
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)