Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G12_e671_14.seq
(1528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 194 1e-49
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 93 4e-19
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 36 0.076
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 32 1.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 32 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 2.2
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 2.2
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.8
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 5.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 5.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 5.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 5.0
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 6.6
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 29 6.6
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 29 6.6
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 29 8.7
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 194 bits (473), Expect = 1e-49
Identities = 95/201 (47%), Positives = 131/201 (65%), Gaps = 1/201 (0%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N RLKEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 532 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
LILFP K KG+++ EE K+A QLRG ++P+ T R +T+ E+ + ++ LR
Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183
Query: 709 GARSIAKLVGIRAKRLKDAAE 771
R+ K G R KR ++AAE
Sbjct: 184 KERADKKYRGKREKRAREAAE 204
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 93.5 bits (222), Expect = 4e-19
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 352 VRYHTKVRAGRGFTLREIRASGLN 423
RY+TK R GRGF+L+E++A+ N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 35.9 bits (79), Expect = 0.076
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Frame = +1
Query: 1267 GPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXXPXPPK---XXXPX 1437
GPP G P G P PP + P PP R G P P PP+ P
Sbjct: 725 GPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGR-GAGPMSSFPPPPRGGMHHMPP 783
Query: 1438 PSPXXGG 1458
P GG
Sbjct: 784 PPSFRGG 790
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 1360 PXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
P P + R G P F P PP P P GGP
Sbjct: 339 PHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGP 372
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.9 bits (69), Expect = 1.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 1360 PXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
P P + R G P F P PP P P GGP
Sbjct: 339 PHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGP 372
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +1
Query: 1237 PXGKPXXXAXG---PPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXX 1407
P G P G PP G P PP P PP R G P
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP---P 299
Query: 1408 PXPPKXXXPX---PSPXXGG 1458
P PP+ P P P GG
Sbjct: 300 PPPPRGSPPTGSLPPPQAGG 319
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 1324 PPXXEXXPXLXX----PXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
PP + P L P PP A P P PP P P P G P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 289
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +1
Query: 1237 PXGKPXXXAXG---PPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXX 1407
P G P G PP G P PP P PP R G P
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP---P 320
Query: 1408 PXPPKXXXPX---PSPXXGG 1458
P PP+ P P P GG
Sbjct: 321 PPPPRGSPPTGSLPPPQAGG 340
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 1324 PPXXEXXPXLXX----PXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
PP + P L P PP A P P PP P P P G P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 310
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = +1
Query: 1237 PXGKPXXXAXG---PPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXX 1407
P G P G PP G P PP P PP R G P
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP---P 305
Query: 1408 PXPPKXXXPX---PSPXXGG 1458
P PP+ P P P GG
Sbjct: 306 PPPPRGSPPTGSLPPPQAGG 325
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 1324 PPXXEXXPXLXX----PXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
PP + P L P PP A P P PP P P P G P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 295
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 535 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 690
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 535 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 690
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 535 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 690
++F K VLK + + A +GPL+P Q+AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.8
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +1
Query: 1237 PXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXXPXP 1416
P G P PP G P G P PP P P PP P P P
Sbjct: 310 PPGMPGMPPPPPPSRFGPPGMGGMP--PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 367
Query: 1417 PKXXXPXPS 1443
P PS
Sbjct: 368 PSRPPAPPS 376
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.8
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +1
Query: 1237 PXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXXPXP 1416
P G P PP G P G P PP P P PP P P P
Sbjct: 320 PPGMPGMPPPPPPSRFGPPGMGGMP--PPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPP 377
Query: 1417 PKXXXPXPS 1443
P PS
Sbjct: 378 PSRPPAPPS 386
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = +2
Query: 1232 GPPKGNXXGGPXDPP*XWGGQTXAXGPXXXNPX--KXKXXPXXXXPXPPXPGXVXXPFFX 1405
GPP GP PP G GP P P P PG P
Sbjct: 153 GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGAS 212
Query: 1406 XXTXXXXPXPXXPPXXXXP 1462
P P PP P
Sbjct: 213 EQGGPGEPGPAGPPGPAGP 231
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = +2
Query: 1232 GPPKGNXXGGPXDPP*XWGGQTXAXGPXXXNPX--KXKXXPXXXXPXPPXPGXVXXPFFX 1405
GPP GP PP G GP P P P PG P
Sbjct: 153 GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGAS 212
Query: 1406 XXTXXXXPXPXXPPXXXXP 1462
P P PP P
Sbjct: 213 EQGGPGEPGPAGPPGPAGP 231
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = +2
Query: 1232 GPPKGNXXGGPXDPP*XWGGQTXAXGPXXXNPX--KXKXXPXXXXPXPPXPGXVXXPFFX 1405
GPP GP PP G GP P P P PG P
Sbjct: 153 GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGAS 212
Query: 1406 XXTXXXXPXPXXPPXXXXP 1462
P P PP P
Sbjct: 213 EQGGPGEPGPAGPPGPAGP 231
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Frame = +2
Query: 1232 GPPKGNXXGGPXDPP*XWGGQTXAXGPXXXNPX--KXKXXPXXXXPXPPXPGXVXXPFFX 1405
GPP GP PP G GP P P P PG P
Sbjct: 153 GPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGAS 212
Query: 1406 XXTXXXXPXPXXPPXXXXP 1462
P P PP P
Sbjct: 213 EQGGPGEPGPAGPPGPAGP 231
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical protein
C15A11.1 protein.
Length = 303
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/80 (27%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
Frame = +2
Query: 1232 GPPKGNXXGGPXDPP*XWGGQTXAXGPXXXNPXKXKXXPXXXXPXPPXPGXVXXPFFXXX 1411
GPP + GP P G A GP P P P PG P
Sbjct: 118 GPPGPDGNAGPEGPSGAPGADGDAAGPGEAGPA-GPAGPPGPDGQPGAPGPNGQPGAAGT 176
Query: 1412 TXX---XXPXPXXPPXXXXP 1462
T P P PP P
Sbjct: 177 TSTNEPGSPGPAGPPGPAGP 196
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = -3
Query: 1460 GPPXXGXGXGXXXXGG--XGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXGXXPXFGX 1287
GP G G G GG G P GG G G G G +G
Sbjct: 52 GPGLGGPGIGGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGG 111
Query: 1286 PXXXGGP 1266
P GGP
Sbjct: 112 PGYGGGP 118
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Frame = -3
Query: 1460 GPPXXGXGXGXXXXGG--XGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXGXXPXFGX 1287
GP G G G GG G P GG G G G G +G
Sbjct: 52 GPGLGGPGIGGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGG 111
Query: 1286 PXXXGGP 1266
P GGP
Sbjct: 112 PGYGGGP 118
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 29.1 bits (62), Expect = 8.7
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 544 PKGKKVLKGEANEEERKLATQLRG-PLMPVQQTAPKSVARPITEDEKNFKAYQYLRGARS 720
PKGKK K ++ E+++ + R PV+ + EDEK + + ++
Sbjct: 43 PKGKKKKKLSSSHEKKRSENKARNNKKKPVELDTTDEAKSTVNEDEKEKSSKRPTAKSKK 102
Query: 721 IAKLVGIRAKRLKDAAENPDDVTK 792
K G + K K + PD K
Sbjct: 103 SKKATGSKKKNKK--TKKPDGSEK 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,500,768
Number of Sequences: 27780
Number of extensions: 531903
Number of successful extensions: 1278
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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