Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G12_e671_14.seq
(1528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 187 2e-47
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 187 2e-47
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 183 3e-46
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 167 2e-41
At4g01985.1 68417.m00265 expressed protein 31 2.0
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 3.5
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 29 6.1
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 29 6.1
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 29 6.1
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 6.1
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 6.1
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 6.1
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 29 6.1
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 6.1
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 29 8.1
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 8.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 8.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 8.1
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 29 8.1
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 187 bits (455), Expect = 2e-47
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 532 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
L++FP + +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181
Query: 709 GARSIAKLVGIRAKRLKDA 765
R+ + G RAKR +A
Sbjct: 182 LERTNKRHAGARAKRAAEA 200
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 187 bits (455), Expect = 2e-47
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
++Y+ KVR G+GFTL E++A+G+ A TIGIAVD RR+N+S+E LQ NVQRLK Y+ +
Sbjct: 62 LKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTK 121
Query: 532 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
L++FP + +KV G++ EE ATQ++G +P+ + P +T + K+FKA+ +R
Sbjct: 122 LVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIR 181
Query: 709 GARSIAKLVGIRAKRLKDA 765
R+ + G RAKR +A
Sbjct: 182 LERTNKRHAGARAKRAAEA 200
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 183 bits (445), Expect = 3e-46
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 532 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
L++FP + ++V G++ EE ATQ++G MP+ +T D K FKAY +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181
Query: 709 GARSIAKLVGIRAKRLKDA 765
R+ A+ G RAKR +A
Sbjct: 182 LERTNARHAGARAKRAAEA 200
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 167 bits (405), Expect = 2e-41
Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Frame = +1
Query: 172 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 351
K NN+IPNGHF K W+ +VKT FNQPA + RR+ R +RPVV T
Sbjct: 2 KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61
Query: 352 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 531
+ Y+ KVRAG+GFTL E++A+G+ A TIGI+VD R+N+S+E Q NVQRLK Y+A+
Sbjct: 62 LTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAK 121
Query: 532 LILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 708
L++FP+ + +K G++ ++E ATQ++ MP+ + P +T D K F AY +R
Sbjct: 122 LVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIR 181
Query: 709 GARSIAKLVGIRAKRLKDA 765
+ G+RAKR +A
Sbjct: 182 LEGINKRHAGVRAKRAAEA 200
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 31.1 bits (67), Expect = 2.0
Identities = 19/70 (27%), Positives = 19/70 (27%)
Frame = -3
Query: 1445 GXGXGXXXXGGXGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXGXXPXFGXPXXXGGP 1266
G G GG G G A GG G G GG G G GG
Sbjct: 129 GAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGRGGKSGGGAGGGVGGGVGAGGGAGGS 188
Query: 1265 XAXXXGFPXG 1236
G G
Sbjct: 189 VGAGGGIGSG 198
Score = 29.9 bits (64), Expect = 4.6
Identities = 19/70 (27%), Positives = 19/70 (27%)
Frame = -3
Query: 1445 GXGXGXXXXGGXGXXKKGLXPXRARGGXGXXXXGLXSXXGGSXXXGXXPXFGXPXXXGGP 1266
G G GG G G A GG G G GG G G GG
Sbjct: 74 GGSGGVGAGGGVGGGAGGAIGGGASGGAGGGGKGRGRKGGGGAGGGVGGGVGAGGGAGGS 133
Query: 1265 XAXXXGFPXG 1236
G G
Sbjct: 134 VGAGGGIGGG 143
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 3.5
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Frame = +1
Query: 1222 PXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPP--LARXGXXP 1395
P P +P + PP P P PP P L P PP ++ P
Sbjct: 548 PQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP--PIYPYLSPPPPPTPVSSPPPTP 605
Query: 1396 FFXXPXPPKXXXPXPSP 1446
+ P PP P P P
Sbjct: 606 VYSPPPPPPCIEPPPPP 622
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 168 HFKRFT*NKYMKNKIATQYSF 106
H KRFT ++Y+KNKI T +F
Sbjct: 795 HLKRFTYSRYLKNKIDTFVNF 815
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 168 HFKRFT*NKYMKNKIATQYSF 106
H KRFT ++Y+KNKI T +F
Sbjct: 795 HLKRFTYSRYLKNKIDTFVNF 815
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 168 HFKRFT*NKYMKNKIATQYSF 106
H KRFT ++Y+KNKI T +F
Sbjct: 796 HLKRFTYSRYLKNKIDTFVNF 816
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.5 bits (63), Expect = 6.1
Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Frame = +1
Query: 1222 PXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFF 1401
P + P P PP P P +PP + P P PP P
Sbjct: 119 PPTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTPKPPHHKPPP---TPCPPPTPTPTPPVV 175
Query: 1402 X--XPXPPKXXXPXPSP 1446
P PP P P+P
Sbjct: 176 TPPTPTPPVITPPTPTP 192
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 176
Score = 29.5 bits (63), Expect = 6.1
Identities = 21/85 (24%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Frame = +1
Query: 1222 PXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXP---XPPLARXGXX 1392
P P P + PP P P PP P P PP
Sbjct: 36 PTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPP 95
Query: 1393 PFFXXP--XPPKXXXPXPSPXXGGP 1461
P P PP P P+P P
Sbjct: 96 PVASPPPATPPPVATPPPAPLASPP 120
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 191
Score = 29.5 bits (63), Expect = 6.1
Identities = 21/85 (24%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Frame = +1
Query: 1222 PXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXP---XPPLARXGXX 1392
P P P + PP P P PP P P PP
Sbjct: 36 PTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPPP 95
Query: 1393 PFFXXP--XPPKXXXPXPSPXXGGP 1461
P P PP P P+P P
Sbjct: 96 PVASPPPATPPPVATPPPAPLASPP 120
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.5 bits (63), Expect = 6.1
Identities = 21/87 (24%), Positives = 23/87 (26%), Gaps = 6/87 (6%)
Frame = +1
Query: 1219 NPXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXE----PPXXEXXP--XLXXPXPPLAR 1380
NP P PP PN P PP P P PP +
Sbjct: 123 NPPVTVPNPPESSSNPNPPDSSSNPNSNPNPPESSSNPNPPVTVPNPPESSSNPNPPESS 182
Query: 1381 XGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
P P PP+ P P P
Sbjct: 183 SNPNPPITIPYPPESSSPNPPEIVPSP 209
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 29.5 bits (63), Expect = 6.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 517 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITED 675
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 547 KGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQY 702
KGK++L+ A E + T P +P+S+ TE E+N + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 8.1
Identities = 21/80 (26%), Positives = 25/80 (31%)
Frame = +1
Query: 1222 PXXRXPXGKPXXXAXGPPXXLGXPNXGXXPXXXEPPXXEXXPXLXXPXPPLARXGXXPFF 1401
P P P + PP P P PP P + P PP+ P
Sbjct: 529 PVYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPPV--YSPPPPV 586
Query: 1402 XXPXPPKXXXPXPSPXXGGP 1461
P PP P P+P P
Sbjct: 587 HSPPPPVHSPPPPAPVHSPP 606
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +1
Query: 1324 PPXXEXXPXLXXPXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
PP P + P PP+ P F P P P P P P
Sbjct: 715 PPVHSPPPPVHSPPPPVQSPPPPPVFSPPPPAPIYSPPPPPVHSPP 760
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats, Pfam:PF00560;
contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 1309 PXXXEPPXXEXXPXLXXPXPPLARXGXXPFFXXPXPPKXXXPXPSPXXGGP 1461
P PP P P PP+ P F P PP P PSP P
Sbjct: 570 PHVYSPPPPVASPPPPSPPPPVHSPPPPPVF-SPPPPVFSPPPPSPVYSPP 619
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 168 HFKRFT*NKYMKNKIATQYSF 106
H KRFT ++Y KNKI T +F
Sbjct: 781 HLKRFTYSRYFKNKIDTLVNF 801
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,294,237
Number of Sequences: 28952
Number of extensions: 499671
Number of successful extensions: 1338
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -