Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G11_e663_13.seq
         (1556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    37   0.007
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.57 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    31   0.57 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    30   0.99 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   7.0  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   9.3  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 25/72 (34%), Positives = 32/72 (44%)
 Frame = +1

Query: 286 GRGPAGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPD 465
           GR P      +QK L +G+K+FDSGDY + K                     G  IP+PD
Sbjct: 42  GRLPQRKDLLVQK-LQQGRKYFDSGDYALNK---------AGKASDSGITCIGKEIPSPD 91

Query: 466 TVPIRKTSIIQP 501
           T+P R  S   P
Sbjct: 92  TIPHRVVSAGSP 103


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 429 GWCSRCFKWSRKVTRSLFCHLIITRVEEFLPFG*PFLQKSR 307
           GWCS  F+  +K  R   C+  I      LPFG PF+++ R
Sbjct: 681 GWCSLVFEAYQKWNR---CYYSIFLNNNILPFGHPFVKECR 718


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 461 QTLSRFARLLSSNPSSPHRVRLPSCTSRHWSFNFA 565
           QT++ F+ L+  N + PH V  P+ T  +W   FA
Sbjct: 421 QTIAFFSLLMDKNINGPHLVIAPASTMENWLREFA 455


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 638 HQFWYILLLVGFSFHY 685
           HQ W+I ++VG +FHY
Sbjct: 409 HQIWHIAIIVGVAFHY 424


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 461 QTLSRFARLLSSNPSSPHRVRLPSCTSRHW 550
           Q ++ FA LL      PH V +PS T  +W
Sbjct: 584 QVVAFFALLLEQGHHGPHLVVVPSSTLENW 613


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -1

Query: 788 IPNVLIKVSFKFQHRQINXS---QCCHQI 711
           + NV+++V+F FQ RQ+N     + CH +
Sbjct: 177 VHNVMLQVNFSFQARQLNTEIQLRRCHSL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,261,004
Number of Sequences: 5004
Number of extensions: 73286
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 876120908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)