Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G11_e663_13.seq
         (1556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0464 - 8683232-8684596                                           33   0.61 
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    29   7.5  

>03_02_0464 - 8683232-8684596
          Length = 454

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 428 PSCQQATPFLHQTLSRFARLLSSNPSSPHRVRLPSCTSRHWSF 556
           PS   A+PFL     +   +  + PSSPH  ++P  T+R  SF
Sbjct: 157 PSSPCASPFLSPLSPQSLSITPAVPSSPHNRQIPQATTRQSSF 199


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 486 FYHPTQVLHTESDFLAVPPVIG 551
           FY+ T+VLH E+ FL    VIG
Sbjct: 324 FYYQTEVLHLEASFLGTARVIG 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,108,681
Number of Sequences: 37544
Number of extensions: 502444
Number of successful extensions: 799
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5023712764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)