Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G11_e663_13.seq
         (1556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical pr...    38   0.019
AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical ...    29   6.7  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>Z83235-1|CAB05775.1|  174|Caenorhabditis elegans Hypothetical
           protein K10C3.2 protein.
          Length = 174

 Score = 37.9 bits (84), Expect = 0.019
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 277 AVLGRGPAGH-SAFLQKRLAKGQKFFDSGDYQMAKQRPG 390
           A  G+ PA   S+FLQK+L + +KFFDSGDY M K + G
Sbjct: 35  AATGKLPARPASSFLQKKLQQ-RKFFDSGDYAMDKSKAG 72



 Score = 30.3 bits (65), Expect = 3.9
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +1

Query: 451 IPTPDTVPIRKTSIIQP 501
           IP PDTVP RK SII P
Sbjct: 133 IPRPDTVPQRKASIINP 149


>AC006661-9|AAF39885.1|  337|Caenorhabditis elegans Hypothetical
           protein H20J04.7 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 385 VSVLPSDNHQSRRIFALWLAFFAKKQNG 302
           + +L   N + +RIF LWL FF    NG
Sbjct: 170 IGILGLRNFKIKRIFILWLGFFENPWNG 197


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 533 CTSRHWSFNFAVNNISHFIFSYISSQRAMLLVFIMHQFWYIL 658
           C  + ++F     NIS F  +Y+S+Q   LL+F++    ++L
Sbjct: 87  CKFKIFNFPLKALNISTFYIAYVSTQTFHLLIFLLAAERFVL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,554,795
Number of Sequences: 27780
Number of extensions: 438234
Number of successful extensions: 882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)