Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G11_e663_13.seq
         (1556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25040.1 68418.m02967 integral membrane transporter family pr...    30   4.7  

>At5g25040.1 68418.m02967 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains Pfam PF03092: BT1
           family; contains TIGRFAMS TIGR00788: folate/biopterin
           transporter; Interpro IPR001991/ PR00173
           Sodium:dicarboxylater symporter family
          Length = 492

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 613 GDAFSFYYAPILVHIITSRF*FSLLTDFFAL 705
           G+   F+ + ILVH++ S+  F LLT  FAL
Sbjct: 191 GELLGFFMSGILVHLVGSKGVFGLLTFTFAL 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,049,404
Number of Sequences: 28952
Number of extensions: 394405
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4183148928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)