Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G10_e655_14.seq
(1598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 42 0.001
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 42 0.001
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 42 0.001
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 42 0.001
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 42 0.001
03_01_0034 + 318432-318825,318902-319851 42 0.002
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 36 0.089
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 31 2.5
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 38.3 bits (85), Expect = 0.017
Identities = 25/63 (39%), Positives = 28/63 (44%)
Frame = +1
Query: 241 HRSLTTADSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGR 420
H + DSDLQ ++ G V P DL P TMDSV SGP QI RP
Sbjct: 32 HTGKYSGDSDLQLERINVYYNEASGGRYV--PRAVLMDLEPGTMDSVRSGPYGQIFRPDN 89
Query: 421 LXF 429
F
Sbjct: 90 FVF 92
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 260 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 319
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 320 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 351
Score = 33.9 bits (74), Expect = 0.36
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV +GP QI RP F
Sbjct: 247 DLEPGTMDSVRTGPYGQIFRPDNFVF 272
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 36.7 bits (81), Expect = 0.051
Identities = 24/56 (42%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP QI RP F
Sbjct: 39 DSDLQLERINVYYNEASGGRYV--PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 38.7 bits (86), Expect = 0.013
Identities = 25/63 (39%), Positives = 28/63 (44%)
Frame = +1
Query: 241 HRSLTTADSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGR 420
H + DSDLQ ++ G V P DL P TMDSV SGP QI RP
Sbjct: 32 HTGKYSGDSDLQLERINVYYNEASGGRFV--PRAVLMDLEPGTMDSVRSGPFGQIFRPDN 89
Query: 421 LXF 429
F
Sbjct: 90 FVF 92
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 33.9 bits (74), Expect = 0.36
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV +GP QI RP F
Sbjct: 67 DLEPGTMDSVRTGPYGQIFRPDNFVF 92
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 41.5 bits (93), Expect = 0.002
Identities = 28/86 (32%), Positives = 34/86 (39%)
Frame = +2
Query: 413 PXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTXYGGGXAP 592
P +F FG + N W HYTE A L L H+ GGG
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL-GGGTGS 145
Query: 593 XWAPLLXSKXREDXXDXIMXTYCVXP 670
LL SK RE+ D +M T+ V P
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 35.1 bits (77), Expect = 0.16
Identities = 23/56 (41%), Positives = 25/56 (44%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP I RP F
Sbjct: 39 DSDLQLERVNVYYNEASCGRFV--PRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVF 92
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 35.9 bits (79), Expect = 0.089
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = +1
Query: 256 TADSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
T +SDLQ ++ G V P DL P TMDSV +GP QI RP F
Sbjct: 37 TGNSDLQLERVNVYYNEASCGRFV--PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVF 92
Score = 30.3 bits (65), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 575 GGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 161 GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 192
Score = 29.9 bits (64), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXL 490
P + P +F FG + N W HYTE A L
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL 112
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDS+ SGP I RP F
Sbjct: 67 DLEPGTMDSLRSGPIGGIFRPDNFVF 92
Score = 30.3 bits (65), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 575 GGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 156 GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 187
Score = 29.5 bits (63), Expect = 7.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 413 PXDFXFGXAVXXNIWTXXHYTEXAXL 490
P +F FG + N W HYTE A L
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAEL 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,619
Number of Sequences: 37544
Number of extensions: 180744
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5186142276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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