Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G10_e655_14.seq
(1598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 44 5e-04
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 44 5e-04
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 43 6e-04
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 41 0.002
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.039
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 32 1.1
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 30 4.5
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 43.6 bits (98), Expect = 5e-04
Identities = 30/93 (32%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D IM T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRIMNTFSVVP 171
Score = 37.1 bits (82), Expect = 0.039
Identities = 24/56 (42%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP QI RP F
Sbjct: 39 DSDLQLERINVYYNEATGGKYV--PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 43.6 bits (98), Expect = 5e-04
Identities = 30/93 (32%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 293 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSL 352
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D IM T+ V P
Sbjct: 353 -GGGTGSGMGTLLISKIREEYPDRIMNTFSVVP 384
Score = 37.1 bits (82), Expect = 0.039
Identities = 24/56 (42%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP QI RP F
Sbjct: 252 DSDLQLERINVYYNEATGGKYV--PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVF 305
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 43.2 bits (97), Expect = 6e-04
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELMDSVLDVVRKEAESCDCIQGFQLTHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D IM T+ + P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRIMNTFSIVP 171
Score = 37.1 bits (82), Expect = 0.039
Identities = 24/56 (42%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP QI RP F
Sbjct: 39 DSDLQLERINVYYNEATGGKYV--PRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 41.1 bits (92), Expect = 0.002
Identities = 29/93 (31%), Positives = 35/93 (37%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 25 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCIQGFQLTHS- 83
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL K RE+ D IM T+ V P
Sbjct: 84 LGGGTGSGMVTLLILKIREEYPDRIMNTFSVVP 116
Score = 35.1 bits (77), Expect = 0.16
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV SGP QI RP F
Sbjct: 12 DLEPGTMDSVRSGPFGQIFRPDNFVF 37
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 37.1 bits (82), Expect = 0.039
Identities = 24/56 (42%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
DSDLQ ++ G V P DL P TMDSV SGP QI RP F
Sbjct: 39 DSDLQLERINVYYNEATGGKYV--PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 575 GGGXAPXWAPLLXSKXREDXXDXIMXTYCVXPCTL 679
GGG LL SK RE+ D ++ ++CV P L
Sbjct: 48 GGGTGSGLGSLLLSKIREEYPDRLVSSFCVLPSPL 82
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 30.3 bits (65), Expect = 4.5
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Frame = +3
Query: 177 KPXMEPXVLXDHXXDEXXPSTXPV---TYHXRLRLAGWRRIXXHYXEALR-RHSTMPXAI 344
+P P L + P+T P +RLA W RI EALR S+ P +
Sbjct: 1217 EPARTPSALAERITSPEPPATRPKHPGRVEAGMRLAKWNRINRAKKEALRVAQSSEPKGL 1276
Query: 345 LAXPXAXXHGLCAIGTLXTDLXTRXTSFSDXPXPXTSGL 461
A G + G T +++S +GL
Sbjct: 1277 RARADDAAAGTASAGITHTPAPESNSAWSASSVIGLAGL 1315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,607,163
Number of Sequences: 59808
Number of extensions: 178514
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5246786319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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