Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G10_e655_14.seq
(1598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 43 5e-04
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 43 5e-04
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 43 6e-04
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 42 0.001
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 42 0.001
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 42 0.001
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 42 0.001
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 42 0.001
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 42 0.001
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 43.2 bits (97), Expect = 5e-04
Identities = 29/93 (31%), Positives = 37/93 (39%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P ++ P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHS- 138
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 35.5 bits (78), Expect = 0.098
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +1
Query: 256 TADSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
T DSDLQ ++ G V P DL P TMDS+ SGP Q RP F
Sbjct: 37 TGDSDLQLERINVYYNEASCGRFV--PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 43.2 bits (97), Expect = 5e-04
Identities = 29/93 (31%), Positives = 37/93 (39%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P ++ P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHS- 138
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 139 LGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 35.5 bits (78), Expect = 0.098
Identities = 23/58 (39%), Positives = 26/58 (44%)
Frame = +1
Query: 256 TADSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
T DSDLQ ++ G V P DL P TMDS+ SGP Q RP F
Sbjct: 37 TGDSDLQLERINVYYNEASCGRFV--PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVF 92
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 42.7 bits (96), Expect = 6e-04
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDS+ SGP QI RP F
Sbjct: 67 DLEPGTMDSLRSGPFGQIFRPDNFVF 92
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 35.1 bits (77), Expect = 0.13
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV SGP QI RP F
Sbjct: 67 DLEPGTMDSVRSGPYGQIFRPDNFVF 92
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 33.9 bits (74), Expect = 0.30
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV +GP QI RP F
Sbjct: 67 DLEPGTMDSVRTGPYGQIFRPDNFVF 92
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
Score = 34.7 bits (76), Expect = 0.17
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 262 DSDLQDGDASMXITXRLSGGIVRCPXPS*XDLXPXTMDSVXSGPXXQIXRPGRLXF 429
D+DLQ ++ G V P DL P TMDS+ SGP QI RP F
Sbjct: 39 DTDLQLERINVYFNEASGGKYV--PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVF 92
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSL 139
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 140 -GGGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171
Score = 35.1 bits (77), Expect = 0.13
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDSV SGP QI RP F
Sbjct: 67 DLEPGTMDSVRSGPYGQIFRPDNFVF 92
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 140
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 141 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 172
Score = 34.7 bits (76), Expect = 0.17
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDS+ SGP QI RP F
Sbjct: 68 DLEPGTMDSIRSGPYGQIFRPDNFVF 93
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 41.9 bits (94), Expect = 0.001
Identities = 29/93 (31%), Positives = 36/93 (38%)
Frame = +2
Query: 392 PXXRSXDPXDFXFGXAVXXNIWTXXHYTEXAXLXRXRLKXRSXXIXXX*LXTXDXX*HTX 571
P + P +F FG + N W HYTE A L L H+
Sbjct: 81 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSL 140
Query: 572 YGGGXAPXWAPLLXSKXREDXXDXIMXTYCVXP 670
GGG LL SK RE+ D +M T+ V P
Sbjct: 141 -GGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 172
Score = 34.7 bits (76), Expect = 0.17
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 352 DLXPXTMDSVXSGPXXQIXRPGRLXF 429
DL P TMDS+ SGP QI RP F
Sbjct: 68 DLEPGTMDSIRSGPFGQIFRPDNFVF 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,898
Number of Sequences: 28952
Number of extensions: 117482
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4318089216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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