Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G09_e647_13.seq
         (1604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)                  30   5.9  
SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  

>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
          Length = 577

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 293 PSKGSSLTTADLYHSINIQNSMETALTQRPLRGCRGAV 180
           P K S  T  +  H +   N + TAL++RP++G   AV
Sbjct: 256 PMKASLKTYCNEGHDVAHANDIHTALSERPVKGTTAAV 293


>SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 293 PSKGSSLTTADLYHSINIQNSMETALTQRPLRGCRGAV 180
           P K +  T  +  H +   N M TAL++RP++G   AV
Sbjct: 810 PMKAALKTYCNEGHDMANANDMHTALSERPVKGTTAAV 847


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,603,763
Number of Sequences: 59808
Number of extensions: 533029
Number of successful extensions: 923
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5231730112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)