Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G08_e639_14.seq
         (1585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...   114   4e-26
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   9.4  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   9.4  

>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score =  114 bits (274), Expect = 4e-26
 Identities = 57/114 (50%), Positives = 71/114 (62%)
 Frame = +2

Query: 197 MAWRSHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATIS 376
           M W  +  +N  ++Q L  +  + +   + AM    R  YC  +PY+DSPQSIGY  TIS
Sbjct: 1   MFWSFNLSSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTIS 60

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
           APHMHA AL+ L+  L PG  ALD GSGSGYL A MA MV   G V GI+HIP+
Sbjct: 61  APHMHATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGTVKGIEHIPQ 114


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 167 HEYSILMLSNNHSLF 123
           HEYSI+ L++NHS F
Sbjct: 302 HEYSIINLTSNHSSF 316


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 470 GNLNQNPHLTLFHQGAIDFLIFPKHEHAYAV 378
           GN+++ P   L  +G  DF + P   HA AV
Sbjct: 153 GNMSKGPIAKLRVEGISDFALSPGQNHAVAV 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,745,649
Number of Sequences: 5004
Number of extensions: 65397
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 893960474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)