Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G08_e639_14.seq
         (1585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517...   121   1e-27
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715...    95   2e-19
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631...    31   2.5  
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     31   2.5  
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     31   2.5  
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373...    30   5.8  

>04_04_0268 -
           24050721-24050971,24051112-24051276,24051479-24051749,
           24052344-24052517
          Length = 286

 Score =  121 bits (292), Expect = 1e-27
 Identities = 60/107 (56%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = +2

Query: 224 NFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLH--TPYLDSPQSIGYSATISAPHMHAH 397
           N  +++ LK  G V++D V   M   DR  +     TPY DSP  IGY+ATISAPHMHA 
Sbjct: 69  NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTPYTDSPMPIGYNATISAPHMHAT 128

Query: 398 ALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
            LE+LK+ L PG  ALD GSGSGYLTAC A MVG  G  +GI+HIPE
Sbjct: 129 CLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPE 175



 Score = 35.5 bits (78), Expect = 0.12
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 643 PPEAPYSAIHVGAAAPTMP 699
           P +APY AIHVGAAAP +P
Sbjct: 210 PDDAPYDAIHVGAAAPEIP 228


>08_02_1558 +
           27870327-27870332,27870890-27871163,27871438-27871515,
           27871753-27871917,27872353-27872603
          Length = 257

 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 57/133 (42%), Positives = 72/133 (54%), Gaps = 28/133 (21%)
 Frame = +2

Query: 224 NFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLH--TPYLDSPQSIGYSATISAPHMHAH 397
           N  M+++L+  GI+KS  V   M   DR  +     +PY DSP  IGY+ATISAPHMHA 
Sbjct: 14  NKAMVEQLQRYGIIKSSKVAQVMETIDRGLFVPPGASPYFDSPMPIGYNATISAPHMHAS 73

Query: 398 ALEILKNQLLPGEKALDXGS--------------------------GSGYLTACMAXMVG 499
            LE+L+  L PG +ALD GS                          G+GYLTAC A MVG
Sbjct: 74  CLELLEKHLQPGMRALDVGSGFEMQKCLPTYVEKTIFSFISQLFREGTGYLTACFAIMVG 133

Query: 500 ETGNVIGIDHIPE 538
             G  +G++HIPE
Sbjct: 134 PEGRAVGVEHIPE 146



 Score = 37.1 bits (82), Expect = 0.038
 Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 583 PLLTSGEN*TYSPVTDVXATPPE-APYSAIHVGAAAPTMPSSSY*AXLKPG 732
           P LT G    +  +TD     PE APY AIHVGAAAP +P +     LKPG
Sbjct: 162 PQLTDGSLSIH--ITDGREGWPELAPYDAIHVGAAAPQIPQALI-EQLKPG 209


>04_04_0168 +
           23259459-23260001,23260883-23262780,23263000-23263150,
           23263851-23264669
          Length = 1136

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +2

Query: 269 SDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATISAPHMHAHALEILKNQLLPGE-KAL 445
           S   VN+  + DR + C         +++ ++   S        L++ K+ L+    K+L
Sbjct: 193 SGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL 252

Query: 446 DXGSGSGYLTACMAXMVGETGNVIGIDHIPEPY*IGYK 559
                 G LT      VG + NV+ + H P  Y + Y+
Sbjct: 253 PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYE 290


>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 419 QLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGID 526
           +L+PG   L+ G+GSG LT  +A  V   G V   D
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFD 155


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 419 QLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGID 526
           +L+PG   L+ G+GSG LT  +A  V   G V   D
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFD 155


>12_01_0476 +
           3738526-3738567,3738695-3738739,3739240-3739601,
           3739691-3740057,3740490-3740555,3741630-3741743
          Length = 331

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 251 PLTFGSYQSWLLHDSSRP*LILSRQKLRHEYSILM 147
           P+   S    L+ D+ RP   + RQ LRH Y +L+
Sbjct: 134 PIQLSSSYMNLIKDNERPYFSVGRQSLRHSYFVLL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,854,570
Number of Sequences: 37544
Number of extensions: 475765
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5128131736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)