Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G08_e639_14.seq
         (1585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      46   1e-04
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   3e-04
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  44   4e-04
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   42   0.001
SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.068
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)           33   0.63 
SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)        33   0.83 
SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)                     32   1.5  

>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 461 SGYLTACMAXMVGETGNVIGIDHIPE 538
           SGYLTA MA MVG+TG V+GIDHI E
Sbjct: 2   SGYLTAVMAIMVGKTGKVVGIDHIQE 27


>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = +2

Query: 239 QKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIG 358
           Q L ANG++KSD V  A+   DRK+Y    P++D+PQ IG
Sbjct: 63  QLLTANGVLKSDRVEAALRKVDRKHYSKLNPFMDAPQPIG 102



 Score = 34.3 bits (75), Expect = 0.27
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 655 PYSAIHVGAAAPTMPSSSY*AXLKPG 732
           P+ AIHVGAAAPT+P       LKPG
Sbjct: 161 PFDAIHVGAAAPTLPEELL-EQLKPG 185


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
 Frame = +2

Query: 209 SHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGY---SATISA 379
           S G  N ++++ LK  G +K+  V       DR +Y        + + + +   +  +SA
Sbjct: 6   SAGKDNNELVENLKEAGYIKTPKVEQVFREVDRCDYFPEGAEEHAYKDLAWKQKNVHLSA 65

Query: 380 PHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGID 526
           P +++  +E L  +L  G   L+ GSG+GYL+  +  ++G +G   G++
Sbjct: 66  PCIYSEVMECL--ELEEGLSFLNLGSGTGYLSTMVGLIIGPSGTNHGVE 112


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +2

Query: 233 MIQKLKANGIVKSDAVVNAMLIADRKNYC----LHTPYLDSPQSIGYSATISAPHMHAHA 400
           M+ K    GI+ S  V +A     R  +         Y D P        +SAPHM+A  
Sbjct: 1   MVDKFVHTGIITSKEVEDAFRAVPRGAFVPPELYEEAYYDQPLRGDPHIHMSAPHMYAGV 60

Query: 401 LEILKNQLLPGEKALDXGSGSGYLTACMAXMV 496
           LE L   L PG   L+ GSG+GY +  +  ++
Sbjct: 61  LEAL--DLCPGLSFLNVGSGTGYFSCLVGYII 90


>SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 36.3 bits (80), Expect = 0.068
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 419 QLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPEPY*IGYK 559
           + L G + LD GSGSG     ++ +VGE G + G+D  PE   I  K
Sbjct: 11  ECLDGCRILDLGSGSGRDCYVLSKLVGEEGFITGVDMTPEQLDIANK 57


>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
          Length = 462

 Score = 33.1 bits (72), Expect = 0.63
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 392 AHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGID 526
           AH +  + +Q+   EK LD GSG GYL+  +A   G T  V G+D
Sbjct: 135 AHVVNQIASQV-KAEKVLDLGSGKGYLSQALALDYGLT--VTGVD 176


>SB_34038| Best HMM Match : Ubie_methyltran (HMM E-Value=0.0014)
          Length = 267

 Score = 32.7 bits (71), Expect = 0.83
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 437 KALDXGSGSGYLTACMAXMVGETGNVIGIDHIPEPY*IGYK 559
           + LD G GSG     ++ +VGE G V G+D  PE   I  K
Sbjct: 17  RVLDLGCGSGRDCFILSKLVGEKGFVTGVDMTPEQVDIANK 57


>SB_33394| Best HMM Match : PCMT (HMM E-Value=0.53)
          Length = 69

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 655 PYSAIHVGAAAPTMP 699
           P+ AIHVGAAAPT+P
Sbjct: 53  PFDAIHVGAAAPTLP 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,062,023
Number of Sequences: 59808
Number of extensions: 508673
Number of successful extensions: 1152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5188097434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)