Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G08_e639_14.seq
         (1585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15129-1|AAB60240.1|  225|Caenorhabditis elegans protein-L-isoas...   139   4e-33
U09669-1|AAA82166.1|  225|Caenorhabditis elegans protein-L-isoas...   139   4e-33
AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein carbo...   139   4e-33
AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein carbo...   118   9e-27
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    33   0.42 
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    29   9.1  

>U15129-1|AAB60240.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score =  139 bits (337), Expect = 4e-33
 Identities = 63/114 (55%), Positives = 80/114 (70%)
 Frame = +2

Query: 197 MAWRSHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATIS 376
           MAWRS G TN ++I  L+ N +  S    +AM   DR ++    PY D+PQ IGY+AT+S
Sbjct: 1   MAWRSSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRAPYEDAPQRIGYNATVS 60

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
           APHMHA AL+ L+N L+ G KALD GSGSGYLT CMA MVG  G V+GI+H+P+
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQ 114


>U09669-1|AAA82166.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score =  139 bits (337), Expect = 4e-33
 Identities = 63/114 (55%), Positives = 80/114 (70%)
 Frame = +2

Query: 197 MAWRSHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATIS 376
           MAWRS G TN ++I  L+ N +  S    +AM   DR ++    PY D+PQ IGY+AT+S
Sbjct: 1   MAWRSSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRAPYEDAPQRIGYNATVS 60

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
           APHMHA AL+ L+N L+ G KALD GSGSGYLT CMA MVG  G V+GI+H+P+
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQ 114


>AF022968-2|AAB69887.1|  225|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform a protein.
          Length = 225

 Score =  139 bits (337), Expect = 4e-33
 Identities = 63/114 (55%), Positives = 80/114 (70%)
 Frame = +2

Query: 197 MAWRSHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATIS 376
           MAWRS G TN ++I  L+ N +  S    +AM   DR ++    PY D+PQ IGY+AT+S
Sbjct: 1   MAWRSSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRAPYEDAPQRIGYNATVS 60

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
           APHMHA AL+ L+N L+ G KALD GSGSGYLT CMA MVG  G V+GI+H+P+
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQ 114


>AF022968-1|ABR92613.1|  219|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1, isoform b protein.
          Length = 219

 Score =  118 bits (285), Expect = 9e-27
 Identities = 58/114 (50%), Positives = 74/114 (64%)
 Frame = +2

Query: 197 MAWRSHGVTNFDMIQKLKANGIVKSDAVVNAMLIADRKNYCLHTPYLDSPQSIGYSATIS 376
           MAWRS G TN ++I  L+ N +  S    +AM   DR ++    PY D+PQ IGY+AT  
Sbjct: 1   MAWRSSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRAPYEDAPQRIGYNAT-- 58

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGIDHIPE 538
               HA AL+ L+N L+ G KALD GSGSGYLT CMA MVG  G V+GI+H+P+
Sbjct: 59  ----HAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQ 108


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
 Frame = +2

Query: 224 NFDMIQKLKANGIVKSDAVVNAMLIADRKNYC-------LHTPYLDSPQSIG--YSATIS 376
           N D+I  L  N  ++   +  A  + DR ++           P L S +  G  Y   + 
Sbjct: 8   NDDLIDFLVKNDTIRRRNIERAFRLVDRSDFLPISERKFTRLPSLTSTEPGGPFYPGALR 67

Query: 377 APHMHAHALEILKNQLLPGEKALDXGSGSGYLTACMAXMVGETGNVIGID 526
              +  +A       L  G   L  G+GSGYL+     ++GETG   GI+
Sbjct: 68  VGAIDIYAKLFDYLDLRKGHSFLHIGTGSGYLSTIAGILLGETGINHGIE 117


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = -3

Query: 347 EVNQDREYVDSNFFCLQLALHLQRHQILLFH*PLTFGSYQSWLLHDSSRP*LIL-SRQKL 171
           E+  D   ++++ +C+QL   +  HQ+   H P   GS +  LLHD++RP   L +RQKL
Sbjct: 175 ELLPDGATINADLYCIQLEKVVHAHQL---HRPR--GS-KLLLLHDNARPHTALKTRQKL 228

Query: 170 R 168
           +
Sbjct: 229 Q 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,469,973
Number of Sequences: 27780
Number of extensions: 393292
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4587472916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)