Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G06_e623_14.seq
         (1557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9Y296 Cluster: Trafficking protein particle complex su...    97   1e-18
UniRef50_A7RYC9 Cluster: Predicted protein; n=1; Nematostella ve...    92   4e-17
UniRef50_Q5DF44 Cluster: SJCHGC05124 protein; n=2; Schistosoma j...    73   2e-11
UniRef50_Q20100 Cluster: Putative uncharacterized protein; n=2; ...    56   2e-06

>UniRef50_Q9Y296 Cluster: Trafficking protein particle complex
           subunit 4; n=34; Coelomata|Rep: Trafficking protein
           particle complex subunit 4 - Homo sapiens (Human)
          Length = 219

 Score = 96.7 bits (230), Expect = 1e-18
 Identities = 43/97 (44%), Positives = 62/97 (63%)
 Frame = +3

Query: 81  MXIYGVYXXSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIXVSFGXXDGINVG 260
           M I+ VY  +K+GGLIY  D   P+ E EKTF YPLD+ L   ++++ V+FG  DGI VG
Sbjct: 1   MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60

Query: 261 NVLLTVNGSPXNGKTTDDGREVXXILEIKXXYPLNLK 371
           + +L +NG   NG+ T DG+EV   L     YP++++
Sbjct: 61  HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIR 97


>UniRef50_A7RYC9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 222

 Score = 91.9 bits (218), Expect = 4e-17
 Identities = 43/97 (44%), Positives = 61/97 (62%)
 Frame = +3

Query: 81  MXIYGVYXXSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIXVSFGXXDGINVG 260
           M I+ VY  +++GGLIY++DH  PK E EKT+ YPL+I L  ++ K+ V FG  D + VG
Sbjct: 1   MAIFSVYILNRAGGLIYHFDHYTPKSEVEKTYSYPLEITLRGDD-KLEVIFGARDNVKVG 59

Query: 261 NVLLTVNGSPXNGKTTDDGREVXXILEIKXXYPLNLK 371
           + LL +NG    G+   DG +V   L  K  YP++LK
Sbjct: 60  HSLLAINGENVVGRKLPDGTDVMEFLANKENYPISLK 96


>UniRef50_Q5DF44 Cluster: SJCHGC05124 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC05124 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 236

 Score = 73.3 bits (172), Expect = 2e-11
 Identities = 32/97 (32%), Positives = 53/97 (54%)
 Frame = +3

Query: 81  MXIYGVYXXSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIXVSFGXXDGINVG 260
           M +YG+Y  S+SG L + YDH+   VE EK + YPL       + ++ V FG  D + +G
Sbjct: 1   MSVYGLYVISESGSLQFYYDHSDVNVEVEKKYEYPLPFHFKVVDGRLIVDFGACDDVKIG 60

Query: 261 NVLLTVNGSPXNGKTTDDGREVXXILEIKXXYPLNLK 371
             +++V+G    G   +D R++  +   K  +PL +K
Sbjct: 61  YTVISVDGVMAKGTFLEDNRDIMKVFSDKSNFPLTIK 97


>UniRef50_Q20100 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 224

 Score = 56.4 bits (130), Expect = 2e-06
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
 Frame = +3

Query: 87  IYGVYXXSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIXVSFGXXDGINVGNV 266
           I  ++  +++G LIY+++      E EKT+ +P+D+ L   ++K  V FG  DGI +   
Sbjct: 5   IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64

Query: 267 LLTVNGSPXNGKTTDDGREVXXILEI---KXXYPLNLK 371
           + +VNG   +G     G +   +LE    +  YP+ +K
Sbjct: 65  VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVK 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,579,120
Number of Sequences: 1657284
Number of extensions: 6368020
Number of successful extensions: 9322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9319
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 166957702650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)