Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G06_e623_14.seq
         (1557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    56   5e-08

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 56.4 bits (130), Expect = 5e-08
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
 Frame = +3

Query: 87  IYGVYXXSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIXVSFGXXDGINVGNV 266
           I  ++  +++G LIY+++      E EKT+ +P+D+ L   ++K  V FG  DGI +   
Sbjct: 5   IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64

Query: 267 LLTVNGSPXNGKTTDDGREVXXILEI---KXXYPLNLK 371
           + +VNG   +G     G +   +LE    +  YP+ +K
Sbjct: 65  VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVK 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,052
Number of Sequences: 27780
Number of extensions: 166008
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4494062834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)