Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G05_e615_13.seq
         (1602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    28   4.1  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   7.2  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +2

Query: 143 SLHSLLGNKPNLAVNIESIKAVSESKSQ 226
           SL+SL+GNK     N  S KA SESKSQ
Sbjct: 543 SLNSLVGNKSE---NSSSSKAKSESKSQ 567


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 383 EAFXVRVK*PESQWSIRCQSVLFSLHRRLEKQLIPKRIYGFXSLPYRPRILPPGFYS 213
           + F ++++  ES W +R Q +   L  +  K  + K+     SL   PR+  P  +S
Sbjct: 196 DRFKIKLETEESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFS 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,250
Number of Sequences: 5004
Number of extensions: 37676
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 905853518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)