Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G05_e615_13.seq
         (1602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    31   2.6  
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135...    31   2.6  

>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 137 ITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           + SL  L GN PNL  N  S +A ++ KS++ IY+V
Sbjct: 256 LPSLTVLYGNNPNLCTNDNSCQA-AKHKSKLAIYIV 290


>01_01_0154 -
           1355601-1356102,1356197-1356389,1356465-1356520,
           1356997-1357066,1357188-1357314,1357418-1357695,
           1357908-1358065,1358166-1358246,1358339-1358410,
           1358531-1358602,1358729-1358867,1358987-1360045,
           1360170-1360257
          Length = 964

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 143 SLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           SL+   GN PNL +N  S KA ++ KS++ IY V
Sbjct: 500 SLNVRYGNNPNLCINGNSCKA-AKKKSKLAIYTV 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,406
Number of Sequences: 37544
Number of extensions: 286683
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5197744384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)