Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G05_e615_13.seq
         (1602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)            105   1e-22

>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
          Length = 567

 Score =  105 bits (252), Expect = 1e-22
 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
 Frame = +2

Query: 71  DGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVVDK 250
           DG VA++  K E D++   Q F+T+LH   G+KP + V ++ +K + E  ++VVIYVV++
Sbjct: 253 DGLVAIVVKKKESDVRQQQQEFVTALHKCFGSKPTVMVCVDGLKPLPEDCTEVVIYVVER 312

Query: 251 ---GAXXTHISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMDM 421
              G    H  A+++  +LN                         +LQ YL   P G+D 
Sbjct: 313 AENGTTKIH-PATDVYNYLNQNNIKTQLQTIGVTSVTAKSSIPPALLQQYLDNAPAGIDS 371

Query: 422 RLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
            LW QA  DN  P   +PVPIIGFSE+K R + Q
Sbjct: 372 LLWDQAKKDNPDPEKLLPVPIIGFSELKKRLKFQ 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,676,112
Number of Sequences: 59808
Number of extensions: 313462
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5258524096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)