Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G05_e615_13.seq
         (1602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF157322-1|AAF67488.1|  505|Homo sapiens nucleoporin p54 protein...    99   2e-20
BX538002-1|CAD97957.1|  291|Homo sapiens hypothetical protein pr...    99   4e-20
AK223352-1|BAD97072.1|  507|Homo sapiens nucleoporin 54kDa varia...    99   4e-20
AK222752-1|BAD96472.1|  508|Homo sapiens nucleoporin 54kDa varia...    99   4e-20
AK001517-1|BAA91735.1|  484|Homo sapiens protein ( Homo sapiens ...    97   2e-19

>AF157322-1|AAF67488.1|  505|Homo sapiens nucleoporin p54 protein
           protein.
          Length = 505

 Score =   99 bits (238), Expect = 2e-20
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DKDGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           D+DG V ++FNK E +I++  Q  + SLH +LG    L VN+E  K + + +++VVIYVV
Sbjct: 185 DEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVV 244

Query: 245 DKGAXXT--HISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMD 418
           ++    T   + A+ L A LN                         + Q  LQ PP G+D
Sbjct: 245 ERSPNGTSRRVPATTLYAHLNKPYKNTIAATGVTLSMTRTELSPAQIKQ-LLQNPPAGVD 303

Query: 419 MRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
             +W QA  DN      IPVP++GF E+  R + Q
Sbjct: 304 PIIWEQAKVDNPDSEKVIPVPMVGFKELLRRLKVQ 338


>BX538002-1|CAD97957.1|  291|Homo sapiens hypothetical protein
           protein.
          Length = 291

 Score = 99.1 bits (236), Expect = 4e-20
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DKDGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           D+DG V ++FNK E +I++  Q  + SLH +LG    L VN+E  K + + +++VVIYVV
Sbjct: 6   DEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVV 65

Query: 245 DKGAXXT--HISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMD 418
           ++    T   + A+ L A                             ++  LQ PP G+D
Sbjct: 66  ERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVD 125

Query: 419 MRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
             +W QA  DN      IPVP++GF E+  R + Q
Sbjct: 126 PIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 160


>AK223352-1|BAD97072.1|  507|Homo sapiens nucleoporin 54kDa variant
           protein.
          Length = 507

 Score = 99.1 bits (236), Expect = 4e-20
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DKDGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           D+DG V ++FNK E +I++  Q  + SLH +LG    L VN+E  K + + +++VVIYVV
Sbjct: 186 DEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVV 245

Query: 245 DKGAXXT--HISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMD 418
           ++    T   + A+ L A                             ++  LQ PP G+D
Sbjct: 246 ERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVD 305

Query: 419 MRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
             +W QA  DN      IPVP++GF E+  R + Q
Sbjct: 306 PIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 340


>AK222752-1|BAD96472.1|  508|Homo sapiens nucleoporin 54kDa variant
           protein.
          Length = 508

 Score = 99.1 bits (236), Expect = 4e-20
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DKDGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           D+DG V ++FNK E +I++  Q  + SLH +LG    L VN+E  K + + +++VVIYVV
Sbjct: 187 DEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVV 246

Query: 245 DKGAXXT--HISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMD 418
           ++    T   + A+ L A                             ++  LQ PP G+D
Sbjct: 247 ERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVD 306

Query: 419 MRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
             +W QA  DN      IPVP++GF E+  R + Q
Sbjct: 307 PIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 341


>AK001517-1|BAA91735.1|  484|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
           NUCLEOPORIN NUP57. ).
          Length = 484

 Score = 97.1 bits (231), Expect = 2e-19
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = +2

Query: 65  DKDGHVAMLFNKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVIYVV 244
           D+DG V ++FNK E +I++  Q  + SLH +LG    L V++E  K + + +++VVIYVV
Sbjct: 186 DEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVSVEGTKTLPDDQTEVVIYVV 245

Query: 245 DKGAXXT--HISASELAAFLNXXXXXXXXXXXXXXXXXXXXXXXXXMLQXYLQTPPXGMD 418
           ++    T   + A+ L A                             ++  LQ PP G+D
Sbjct: 246 ERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVD 305

Query: 419 MRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQ 523
             +W QA  DN      IPVP++GF E+  R + Q
Sbjct: 306 PIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQ 340


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,662,113
Number of Sequences: 237096
Number of extensions: 1658865
Number of successful extensions: 3506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3501
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23957124682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)