Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G05_e615_13.seq
(1602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 53 5e-07
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 53 5e-07
Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical p... 53 5e-07
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 3.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 3.0
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 29 7.0
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 29 7.0
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 29 7.0
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 53.2 bits (122), Expect = 5e-07
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 6/180 (3%)
Frame = +2
Query: 20 YPRAAGIRTRR-HEGXDKDGHVAMLFNK--SEQDIKNNXQAFITSLHSLLGNKPNLAVNI 190
+ R GI R E D +G V ++ + + + + + ++LG PN+ V
Sbjct: 309 FERFVGIGYNRISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRY 368
Query: 191 E---SIKAVSESKSQVVIYVVDKGAXXTHISASELAAFLNXXXXXXXXXXXXXXXXXXXX 361
S++ +S+ +++ I + G I +++
Sbjct: 369 APGTSMRTLSDGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKV 428
Query: 362 XXXXXMLQXYLQTPPXGMDMRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQAXQAXL 541
YL+T P G+D R+W QA +N P +PVP+ G+ ++ R + Q ++ L
Sbjct: 429 GMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 488
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 53.2 bits (122), Expect = 5e-07
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 6/180 (3%)
Frame = +2
Query: 20 YPRAAGIRTRR-HEGXDKDGHVAMLFNK--SEQDIKNNXQAFITSLHSLLGNKPNLAVNI 190
+ R GI R E D +G V ++ + + + + + ++LG PN+ V
Sbjct: 219 FERFVGIGYNRISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRY 278
Query: 191 E---SIKAVSESKSQVVIYVVDKGAXXTHISASELAAFLNXXXXXXXXXXXXXXXXXXXX 361
S++ +S+ +++ I + G I +++
Sbjct: 279 APGTSMRTLSDGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKV 338
Query: 362 XXXXXMLQXYLQTPPXGMDMRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQAXQAXL 541
YL+T P G+D R+W QA +N P +PVP+ G+ ++ R + Q ++ L
Sbjct: 339 GMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 398
>Z70284-11|CAA94281.1| 612|Caenorhabditis elegans Hypothetical
protein K07F5.13a protein.
Length = 612
Score = 53.2 bits (122), Expect = 5e-07
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 6/180 (3%)
Frame = +2
Query: 20 YPRAAGIRTRR-HEGXDKDGHVAMLFNK--SEQDIKNNXQAFITSLHSLLGNKPNLAVNI 190
+ R GI R E D +G V ++ + + + + + ++LG PN+ V
Sbjct: 282 FERFVGIGYNRISERTDDEGFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRY 341
Query: 191 E---SIKAVSESKSQVVIYVVDKGAXXTHISASELAAFLNXXXXXXXXXXXXXXXXXXXX 361
S++ +S+ +++ I + G I +++
Sbjct: 342 APGTSMRTLSDGCTEICIIAKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKV 401
Query: 362 XXXXXMLQXYLQTPPXGMDMRLWXQAXADNXXPXNYIPVPIIGFSEIKFRAQCQAXQAXL 541
YL+T P G+D R+W QA +N P +PVP+ G+ ++ R + Q ++ L
Sbjct: 402 GMSKAQRDRYLETVPDGIDERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKL 461
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 280 GISCFSKRRCSENSTDWHRMLHCDSGHXTLTXNASAVPXNTT 405
G SC + C++ ST + C G+ ++ N A+P +TT
Sbjct: 837 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTT 878
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 280 GISCFSKRRCSENSTDWHRMLHCDSGHXTLTXNASAVPXNTT 405
G SC + C++ ST + C G+ ++ N A+P +TT
Sbjct: 934 GASCNANTVCTKGSTCESGLCRCQPGYIAVSGNCVALPMSTT 975
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 316 NSTDWHRMLHCDSGHXTLTXNASAVPXNTTXRYGY 420
N+ DWH D H + S +P T +YGY
Sbjct: 57 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 91
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 316 NSTDWHRMLHCDSGHXTLTXNASAVPXNTTXRYGY 420
N+ DWH D H + S +P T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 29.5 bits (63), Expect = 7.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 316 NSTDWHRMLHCDSGHXTLTXNASAVPXNTTXRYGY 420
N+ DWH D H + S +P T +YGY
Sbjct: 989 NNNDWHPSSTVDIHHVSPVMATSMIPPQTQHQYGY 1023
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,922
Number of Sequences: 27780
Number of extensions: 237313
Number of successful extensions: 530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4649746304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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