Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G05_e615_13.seq
         (1602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13700.1 68414.m01610 glucosamine/galactosamine-6-phosphate i...    30   4.9  

>At1g13700.1 68414.m01610 glucosamine/galactosamine-6-phosphate
           isomerase family protein similar to SP|O95336
           6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) {Homo
           sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate
           isomerase/6-phosphogluconolactonase
          Length = 268

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 59  GXDKDGHVAMLF-NKSEQDIKNNXQAFITSLHSLLGNKPNLAVNIESIKAVSESKSQVVI 235
           G   DGHVA LF N    ++K++   F+T  H     KP       ++  ++ + + VV+
Sbjct: 157 GMGSDGHVASLFPNHPALEVKDDWVTFLTDSH-----KPPPERITFTLPVINSAANVVVV 211

Query: 236 YVVDKGAXXTHISASEL 286
              +  A   H++  +L
Sbjct: 212 ATGESKANAIHLAIDDL 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,804
Number of Sequences: 28952
Number of extensions: 214086
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4327727808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)