Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G04_e607_14.seq
         (1550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    30   0.99 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   3.0  
SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomy...    28   3.0  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   9.2  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 218 VLHLWDLEVDRRVRLLQPHVQLAEALFVNEN 310
           V+++WD+E  + VR L+ H +   AL  N+N
Sbjct: 189 VIYIWDIESTKSVRSLKGHSERVAALAWNDN 219


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 577 HHNYTLSNAPPYFSL---FHNHPKKNSCSLIMLLC 482
           H  Y+L N PP+ +L   FHN P K +  L+ L+C
Sbjct: 501 HAIYSLVNRPPFATLGHVFHNTPMK-AIGLLNLIC 534


>SPBC2G2.03c |sbh1||translocon beta subunit Sbh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 373 RFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHI 471
           + YTD++            +S+ FIASVF+LHI
Sbjct: 59  KLYTDEASGFKVDPVVVMVLSVGFIASVFLLHI 91


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 650 LEGGARYPISPYSE-SYYNFTGRR 718
           ++GG++ P+S   E SYYN+ G++
Sbjct: 190 IDGGSKQPLSDVDEDSYYNWGGKK 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,289,831
Number of Sequences: 5004
Number of extensions: 72710
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 872156560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)