Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G04_e607_14.seq
(1550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0021 - 155700-156023 39 0.012
11_01_0023 - 162079-162402 39 0.012
01_05_0378 + 21628517-21628759 33 0.46
10_08_0214 - 15915156-15915713 31 3.2
12_01_0474 + 3718846-3719097 30 5.7
07_03_0091 + 13312904-13313647 30 5.7
07_03_0089 - 13300902-13301645 30 5.7
07_01_0516 - 3850252-3852870 30 5.7
11_06_0610 - 25449085-25453284 29 7.5
11_06_0202 - 21184217-21184503,21184622-21184982 29 7.5
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 29 7.5
>12_01_0021 - 155700-156023
Length = 107
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/78 (28%), Positives = 30/78 (38%)
Frame = +1
Query: 259 ATSAPRTASGSTVRQRKXXXXXXXXXXXXXXXXXXXMWRFYTDDSXXXXXXXXXXXXMSL 438
AT PR + + R+ M RFYTD++ MSL
Sbjct: 22 ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81
Query: 439 LFIASVFMLHIWGKYTRA 492
FI V LH++GK R+
Sbjct: 82 CFIGFVTALHVFGKLYRS 99
>11_01_0023 - 162079-162402
Length = 107
Score = 38.7 bits (86), Expect = 0.012
Identities = 22/78 (28%), Positives = 30/78 (38%)
Frame = +1
Query: 259 ATSAPRTASGSTVRQRKXXXXXXXXXXXXXXXXXXXMWRFYTDDSXXXXXXXXXXXXMSL 438
AT PR + + R+ M RFYTD++ MSL
Sbjct: 22 ATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDEAPGLRLSPTMVLVMSL 81
Query: 439 LFIASVFMLHIWGKYTRA 492
FI V LH++GK R+
Sbjct: 82 CFIGFVTALHVFGKLYRS 99
>01_05_0378 + 21628517-21628759
Length = 80
Score = 33.5 bits (73), Expect = 0.46
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 367 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 489
M +FYTD++ MS+ FIA V +LH++GK R
Sbjct: 37 MLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77
>10_08_0214 - 15915156-15915713
Length = 185
Score = 30.7 bits (66), Expect = 3.2
Identities = 22/94 (23%), Positives = 25/94 (26%)
Frame = -1
Query: 1460 GXGTGGXXXXGAXXXXGEXKXGXXGXXXXXGXAXXXXRGXXGNXKEGEVAXPXXRXGXXG 1281
G G GG G G G G A G G +G A + G
Sbjct: 76 GGGGGGGGGEGGGSGSGYGSGQGSGYGAGVGGAGGYGSGGGGGGGQGGGAGGYGQGSGYG 135
Query: 1280 XXX*KQXGXXSXXXXGQGXXXGGGWGRAXXPAXG 1179
G G G GGG G+ G
Sbjct: 136 SGYGSGAGGAHGGGYGSGGGGGGGGGQGGGSGSG 169
>12_01_0474 + 3718846-3719097
Length = 83
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 367 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 489
M +FYT+++ MS+ F A V +LH++GK R
Sbjct: 39 MLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79
>07_03_0091 + 13312904-13313647
Length = 247
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 1157 PKXEKKXXPXPXXRPXPNPPPXXPP 1231
PK E K P P +P PNP P P
Sbjct: 192 PKPEPKPEPSPNPKPNPNPKPEPQP 216
>07_03_0089 - 13300902-13301645
Length = 247
Score = 29.9 bits (64), Expect = 5.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 1157 PKXEKKXXPXPXXRPXPNPPPXXPP 1231
PK E K P P +P PNP P P
Sbjct: 192 PKPEPKPEPSPNPKPNPNPKPEPQP 216
>07_01_0516 - 3850252-3852870
Length = 872
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 1181 PXPXXRPXPNPPPXXPPGXG 1240
P P RP P PPP PP G
Sbjct: 19 PPPTSRPLPPPPPPPPPAHG 38
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 1100 GRXPNGPKEXXLTXREXXXPKXEKKXXPXPXXR-PXPNPPPXXPP 1231
G P+ PK T + P+ E P P P+PP PP
Sbjct: 668 GHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPP 712
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 1157 PKXEKKXXPXPXXRPXPNPPPXXPP 1231
P+ K P P P P PPP PP
Sbjct: 162 PQAPKPSSPPPFTSPSPLPPPPPPP 186
>08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 1166 EKKXXPXPXXRPXPNPPPXXPPGXG 1240
E K P P P P+PPP G G
Sbjct: 785 EPKAAPPPVAPPSPSPPPTSGSGSG 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,232,001
Number of Sequences: 37544
Number of extensions: 584781
Number of successful extensions: 3255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5000508548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -