Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G04_e607_14.seq
         (1550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical ...    60   4e-09
Z47745-3|CAA87666.1|  313|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>AC025715-6|AAK68450.1|   81|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.9 protein.
          Length = 81

 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 32/75 (42%), Positives = 40/75 (53%)
 Frame = +1

Query: 268 APRTASGSTVRQRKXXXXXXXXXXXXXXXXXXXMWRFYTDDSXXXXXXXXXXXXMSLLFI 447
           +PR  +G  VRQRK                   +WRFYT+DS            MSL+FI
Sbjct: 7   SPRPTTGG-VRQRKGGAAAAPARARAGGNNGG-LWRFYTEDSTGLKIGPVPVLVMSLVFI 64

Query: 448 ASVFMLHIWGKYTRA 492
           ASVF+LHIWGK+TR+
Sbjct: 65  ASVFVLHIWGKFTRS 79


>Z47745-3|CAA87666.1|  313|Caenorhabditis elegans Hypothetical
           protein T19H5.4 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
 Frame = -2

Query: 742 FPQSRRCKTTASEIVIRLTIGRNWVPGPPLEXXXXXFESLTYLFHYMIKNTKLYKHHNYT 563
           FP  R+C    +     +T GRN VP P          +L +L   +I    +  H +  
Sbjct: 16  FPPVRKCVYDMATNKPEVTCGRNGVPAPERPSARPIRLTLKFLSVCLIL-CAISMHLSLL 74

Query: 562 LSNAPPYFSLF-----HNHPKKNSCSLIMLLCICP 473
              APP FS F     +  P K   +    LC+ P
Sbjct: 75  SQLAPPNFSPFFFFFSNRSPPKERRANPKALCVLP 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,990,096
Number of Sequences: 27780
Number of extensions: 473926
Number of successful extensions: 1497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4473305038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)