Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_G04_e607_14.seq
         (1550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    34   0.22 
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    34   0.22 
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    32   1.2  
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    32   1.2  
At4g18570.1 68417.m02749 proline-rich family protein common fami...    30   3.6  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    30   3.6  
At4g30460.1 68417.m04325 glycine-rich protein                          30   4.7  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   4.7  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +1

Query: 367 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 480
           M RFYTDD+            MSL FI  V  LH++GK
Sbjct: 62  MLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 262 TSAP-RTASGSTVRQRKXXXXXXXXXXXXXXXXXXXMWRFYTDDSXXXXXXXXXXXXMSL 438
           + AP R ++ +T   R+                   M +FYTDD+            MS+
Sbjct: 4   SGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMSI 63

Query: 439 LFIASVFMLHIWGK 480
            FIA V +LH+ GK
Sbjct: 64  GFIAFVAVLHVMGK 77


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 367 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 480
           M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 367 MWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 480
           M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  MLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At4g18570.1 68417.m02749 proline-rich family protein common family
            members: At3g25690, At4g04980, At5g61090 [Arabidopsis
            thaliana]
          Length = 642

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +2

Query: 1157 PKXEK-KXXPXPXXRPXPNPPPXXPPGXGXXGNXXP 1261
            P  +K K  P P   P P PPP  PP  G      P
Sbjct: 16   PSTKKTKDMPSPLPLPPPPPPPLKPPSSGSATTKPP 51


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
            contains Pfam profile PF00657: GDSL-like
            Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 27/111 (24%), Positives = 32/111 (28%)
 Frame = +1

Query: 1129 PINXSGXPXSKXGKKXXPXAGXKALPQPPPXXXPWPXXXXEXXPXCFXLXXPXXPXRXXG 1308
            P   S  P +  G    P    K  P+PPP   P P       P    +  P  P     
Sbjct: 15   PPGPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPPKPQPKPVPPPACP--PTP 72

Query: 1309 XATSPSFXFPXXPRXXXWAXPXXXXXPXXPXLXSPXXXXAPIXXXPPVPXP 1461
                P    P  P+      P     P  P   +P     P    PP P P
Sbjct: 73   PKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAP 123


>At4g30460.1 68417.m04325 glycine-rich protein
          Length = 162

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 2/92 (2%)
 Frame = -1

Query: 1448 GGXXXXGAXXXXGEXKXGXXGXXXXXGXAXXXXRGXXGNX--KEGEVAXPXXRXGXXGXX 1275
            GG    GA    G    G          +     G  G+   + G  A      G  G  
Sbjct: 52   GGGSGSGAGAGSGSGGGGSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRS 111

Query: 1274 X*KQXGXXSXXXXGQGXXXGGGWGRAXXPAXG 1179
                 G  S    G G   GGG GR      G
Sbjct: 112  G-SGRGRGSGGGGGHGGGGGGGGGRGGGGGSG 142


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 1109 PNGPKEXXLTXREXXXPKXEKKXXPXPXXRPXPNPPPXXPP 1231
            P  PK+      E   P+  K+  P P   P P PP    P
Sbjct: 536  PQPPKQETPKPEESPKPQPPKQETPKPEESPKPQPPKQETP 576



 Score = 29.9 bits (64), Expect = 4.7
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 1109 PNGPKEXXLTXREXXXPKXEKKXXPXPXXRPXPNPPPXXPP 1231
            P  PK+      E   P+  K+  P P   P P PP    P
Sbjct: 552  PQPPKQETPKPEESPKPQPPKQETPKPEESPKPQPPKQEQP 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,445,428
Number of Sequences: 28952
Number of extensions: 416112
Number of successful extensions: 1590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4163871744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)