Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G03_e599_13.seq
(1545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 40 0.007
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 36 0.11
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 36 0.11
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 34 0.35
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.81
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 32 1.4
SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.4
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 1.9
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 30 4.3
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 30 4.3
SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08) 30 5.7
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 30 5.7
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 29 7.5
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 29 10.0
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 29 10.0
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 39.5 bits (88), Expect = 0.007
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Frame = +2
Query: 155 KKNTTKELEERRLSSPRK-KELEKRGLSN-LRKGERTIIKHAEEGAVEERGIKLAEGTGR 328
KK +E ++R+ + +K KE+E+R + ++K E K AEE V+E I+L + R
Sbjct: 315 KKRIEEEEQKRKEAEEKKAKEIEQRRMEEEIKKEEEKKRKEAEEKRVKEEQIRLEKERKR 374
Query: 329 KRTIKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERR 463
K +E +KE+ + R E + +RK++ L E R
Sbjct: 375 KEADDRQREEARKEEEEKRKR------EGEVKKRKEEEERLVEAR 413
Score = 35.9 bits (79), Expect = 0.087
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Frame = +2
Query: 170 KELEERRLSSPRKKELEKRGLSNLRKGER--TIIKHAEEGAVEERGIKLAE---GTGRKR 334
KE EER + + RK++ EKR L ++ E K AEE ++E +L E +
Sbjct: 403 KEEEERLVEARRKEQEEKRKLEEQKRKEEEDRRRKEAEEKRIKEEEARLKEERRSKDEEE 462
Query: 335 TIKPAEDELKKEDYQACGR*MTTVE-----EDDCNRRKKKTTSLEER 460
+ A++E K+++ + R E E + +RKK++ EE+
Sbjct: 463 NRRKADEERKRKEQEEAERNRVVQEEKRKIEQEGKQRKKESRKQEEQ 509
Score = 30.7 bits (66), Expect = 3.3
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Frame = +2
Query: 155 KKNTTKELE--ERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGR 328
K+ +ELE ER RK + +KR +K + K A+E +E+R ++
Sbjct: 292 KREREEELERIERVEEMQRKTQEKKRIEEEEQKRKEAEEKKAKE--IEQRRMEEEIKKEE 349
Query: 329 KRTIKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERRYDGVLAK 484
++ K AE++ KE+ + E DD R + + E+R+ +G + K
Sbjct: 350 EKKRKEAEEKRVKEEQIRLEKERKRKEADDRQREEARKEEEEKRKREGEVKK 401
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 35.5 bits (78), Expect = 0.11
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +2
Query: 170 KELEERRLSSPRKKELEK-RGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKP 346
K E+ ++ +E EK + +L K ER ++ EE ++ + I+ E + T+K
Sbjct: 460 KRFEDEKMKLDEARESEKAKTTQHLTKAER-VLSEMEEIKLKMKAIE-QEKLSLQTTVKS 517
Query: 347 AEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERRYDGVLAK 484
EDE+KKE Q V +D+ ++ K S+ ++ AK
Sbjct: 518 LEDEIKKEKEQLK---KNKVAQDEQGKKLKMEVSMTRQKLQEAEAK 560
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 35.5 bits (78), Expect = 0.11
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +2
Query: 170 KELEERRLSSPRKKELE-KRGLSNLRKGERTIIKHAEEGAVE--ERGIKLAEGTGRKRTI 340
++LEE R R+KE E KR +K +K EEG + E +KL E ++R +
Sbjct: 629 RKLEEERTERDRQKEEERKRREEEEKKKREDEVKREEEGRRQKVEAELKLIEDEHKQR-L 687
Query: 341 KPAEDELKKEDYQACGR*MTTVEE-DDCNRRKKKTTSLEERRYD 469
+ E + KKE+ + + EE D K+ E+RY+
Sbjct: 688 EELEKKTKKEEEKKRSEHVNNDEELDRLQEEIKQMGEENEKRYE 731
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 33.9 bits (74), Expect = 0.35
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P +
Sbjct: 714 SPSYSPTSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSYTPASPSYTPTIPSY 773
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 774 SPTSPS 779
Score = 33.5 bits (73), Expect = 0.46
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P +
Sbjct: 672 SPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSN 731
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 732 SPASPS 737
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/66 (27%), Positives = 23/66 (34%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ S+ P P P P P
Sbjct: 679 SPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSY 738
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 739 SPASPS 744
Score = 30.7 bits (66), Expect = 3.3
Identities = 16/66 (24%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 700 SPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSY 759
Query: 1508 SSXTPS 1525
+ +PS
Sbjct: 760 TPASPS 765
Score = 30.3 bits (65), Expect = 4.3
Identities = 16/66 (24%), Positives = 23/66 (34%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ +P+ + P P P P P
Sbjct: 735 SPSYSPASPSYTPASPSYTPASPSYTPASPSYTPTIPSYSPTSPSYSPTSPSYSPASPSY 794
Query: 1508 SSXTPS 1525
+S +PS
Sbjct: 795 TSASPS 800
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/70 (22%), Positives = 22/70 (31%)
Frame = +2
Query: 1316 FVLXSPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPX 1495
+ SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 703 YTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSYTPA 762
Query: 1496 LLLXSSXTPS 1525
+ PS
Sbjct: 763 SPSYTPTIPS 772
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 32.7 bits (71), Expect = 0.81
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +2
Query: 173 ELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAE 352
+ EE + + KE EKR RK ER K +E ER K + RKR K A+
Sbjct: 978 DAEESKKREKKDKEKEKRERELQRKKERDEQKRKKEEEKREREEKKRKEEERKRREK-AD 1036
Query: 353 DELKK 367
ELKK
Sbjct: 1037 KELKK 1041
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 31.9 bits (69), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 85 LVKSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGE 222
++K+ K E+ KKK+A +E+ A KK KP +EG E
Sbjct: 265 VIKTAAQKKAEKKEREKKKKAQEKERQKAKAAAKKEEKPEQEGNTE 310
>SB_23539| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1041
Score = 31.9 bits (69), Expect = 1.4
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +1
Query: 79 QFLVKSTGASKKERSL-TSKKKQACREEKYYQGAGRK--KTIKPAEEGAGEKRTIKPAER 249
++L K+T ++++++ T KK K Q G+ T + + G+K+T + +
Sbjct: 40 KYLAKNTTNNRQKKTRQTLGKKHDKHSAKTRQTLGKNTTNTWQKTRQTTGKKKTRQTLGK 99
Query: 250 RKDYHQACGRRSCGRKR-NQACGRNWKKEDYQACGR*AEKRGLSSLWK 390
+ D H A R++ G+K+ Q G+ K + + A R + ++ W+
Sbjct: 100 KHDKHSAKARQTLGKKKTRQTLGK--KHDKHSAKTRQTLGKNTTNTWQ 145
Score = 31.1 bits (67), Expect = 2.5
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = +2
Query: 158 KNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRT 337
KNTT ++ R + +KK+ +K N + KH+ + R ++T
Sbjct: 138 KNTTNTWQKTRQTIGKKKKHDKHSAKNTTNTRQKHDKHSAKNTTNTRQKHDKHSAKIRQT 197
Query: 338 IKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERRYDGVLAK 484
+ +++ Q G+ T + K TT+ + +YD L K
Sbjct: 198 LGKNTTNTRQKTRQTLGKSSTNTRQKTRQTLGKNTTNTRQ-KYDKPLGK 245
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/70 (25%), Positives = 23/70 (32%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 516 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 575
Query: 1508 SSXTPSLXXS 1537
S +PS S
Sbjct: 576 SPTSPSYSPS 585
Score = 31.5 bits (68), Expect = 1.9
Identities = 18/70 (25%), Positives = 23/70 (32%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 523 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 582
Query: 1508 SSXTPSLXXS 1537
S +PS S
Sbjct: 583 SPSSPSYSPS 592
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 453 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 512
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 513 SPTSPS 518
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 460 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 519
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 520 SPTSPS 525
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 467 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 526
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 527 SPTSPS 532
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 474 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 533
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 534 SPTSPS 539
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 481 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 540
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 541 SPTSPS 546
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 488 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 547
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 548 SPTSPS 553
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 495 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 554
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 555 SPTSPS 560
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 502 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 561
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 562 SPTSPS 567
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 509 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 568
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 569 SPTSPS 574
Score = 31.1 bits (67), Expect = 2.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 530 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 589
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 590 SPSSPS 595
Score = 29.9 bits (64), Expect = 5.7
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Frame = +2
Query: 1316 FVLXSPSFXXXSPFYXPS---FSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXX 1486
F+ SPS SP Y P+ +S SPS + +S P P P P
Sbjct: 419 FMPSSPSMSPASPSYSPTSPGYSPSSPSSGYSPAS-PSYSPTSPSYSPTSPSYSPTSPSY 477
Query: 1487 PPXLLLXSSXTPS 1525
P S +PS
Sbjct: 478 SPTSPSYSPTSPS 490
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLP-PRXXXPPXLLL 1504
SPS+ SP Y P+ SPS S P P P +P PP L
Sbjct: 565 SPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPPHLQS 624
Query: 1505 XSSXTPS 1525
+ P+
Sbjct: 625 TAQPRPT 631
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 31.1 bits (67), Expect = 2.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 135 KKTSMSRRKILPRSWKKEDYQARGRRSWRKEDYQTC 242
++T S+ K L SW Y AR RR WR+ C
Sbjct: 84 RRTIASKLKDLGLSWGHAQYLARNRREWRRTILALC 119
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 31.1 bits (67), Expect = 2.5
Identities = 26/107 (24%), Positives = 44/107 (41%)
Frame = +1
Query: 91 KSTGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERRKDYHQA 270
KS S++ RS + + + +++ + R +P R +D ++
Sbjct: 184 KSLDRSRRSRSRSYSRPSPSPYRSRRSRSRTRRSRSRSRRSRSRSRDRRPRRRSRDRERS 243
Query: 271 CGRRSCGRKRNQACGRNWKKEDYQACGR*AEKRGLSSLWKIDDNRRR 411
RRS R R+++ R +E + GR AEK K DD R R
Sbjct: 244 RERRS-RRSRDKSRSREKSRERGGSRGRSAEKSPEKQRDKSDDRRSR 289
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 30.3 bits (65), Expect = 4.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 91 KSTGASKKERSLTSKK--KQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERR 252
K A K + +KK K+A ++ + A +K T KPA + A K KPA ++
Sbjct: 112 KKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKK 167
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 30.3 bits (65), Expect = 4.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 91 KSTGASKKERSLTSKK--KQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERR 252
K A K + +KK K+A ++ + A +K T KPA + A K KPA ++
Sbjct: 112 KKPAAKKSPKKAAAKKSPKKAAKKPAAKKPAAKKATKKPAAKKAAAKPAKKPAAKK 167
>SB_41667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 30.3 bits (65), Expect = 4.3
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = +2
Query: 173 ELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAE 352
E E R + RKKE KR L L ++ EE+ KLAE ++ K A
Sbjct: 220 EKENRAMRQKRKKEEIKR-LRTLVDNVYACDPRIKKFKEEEKERKLAEKKAKEDAAKAAA 278
Query: 353 DELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEER 460
+E +++ +A E+++ ++K T + +E+
Sbjct: 279 EEKERQRQEALEAERLAKEKEEQLAKEKATQAKKEK 314
>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
Length = 993
Score = 29.9 bits (64), Expect = 5.7
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 97 TGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERRK 255
TG SKK RS SK++ A + AG+ P G+GE ++ + A +R+
Sbjct: 272 TGKSKKSRSKASKRRSANTQPARSDSAGKG---SPTSIGSGENQSEEIAMQRR 321
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 94 STGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERRK--DYHQ 267
S+ KK+ S + ++K+ +++K GRK + PA K KPA + D
Sbjct: 484 SSKEEKKQESSSKEEKKQEKDDKKDDKEGRKASKSPAPRSDSRKEKEKPAPLKSELDIRY 543
Query: 268 ACGRRSCGRK 297
+C R K
Sbjct: 544 SCETRKSAVK 553
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +2
Query: 155 KKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKR 334
+++ K++ E++ ++K E+R RK ++ + + ++++ K GTGRK
Sbjct: 81 RRDKVKQMREKQAEERKRKNEERRLAFEERKRQKEAEEKLKWETLKDQTAKQRPGTGRKL 140
Query: 335 TIKP 346
I P
Sbjct: 141 PIVP 144
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 29.5 bits (63), Expect = 7.5
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 103 ASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGA---GEKRTIKPAERRKDYHQAC 273
AS+K + TSK K++ ++K + +KT KP ++ A ++T KP E++ QA
Sbjct: 184 ASRKTK--TSKTKRSKPQDKQAERQASRKTSKPKDKQAARQASRKTSKPQEKQA-ARQAS 240
Query: 274 GRRSCGRK 297
+ RK
Sbjct: 241 SKTKTSRK 248
>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.5 bits (63), Expect = 7.5
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 265 QACGRRSCGRKRNQACGRNWKKEDYQACGR*AEKRGLSSLW 387
QACG R R QACG + QACG SSLW
Sbjct: 59 QACGPRVT-RLTTQACGPRVTRLTTQACGPRGNTTHNSSLW 98
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 29.1 bits (62), Expect = 10.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 ASKKERSLTSKK---KQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERR 252
A+KK +KK K+ ++ + A +K KPA++ A +K T KPA ++
Sbjct: 219 AAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKK 271
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 155 KKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEE 295
KK K+ ++ + + +KK+++K+ GE+T+ EE +EE
Sbjct: 35 KKKKNKKNKKNKNKNKKKKKMKKKKEEEAEVGEKTLEAENEEEKIEE 81
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 29.1 bits (62), Expect = 10.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 ASKKERSLTSKK---KQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERR 252
A+KK +KK K+ ++ + A +K KPA++ A +K T KPA ++
Sbjct: 124 AAKKSPKKAAKKPAAKKPAAKKAAKKPAAKKAAAKPAKKPAAKKATKKPAAKK 176
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +1
Query: 94 STGASKKERSLTSKKKQACREEKYYQGAGRKKTIKPAEEGAGEKRTIKPAERRKD 258
+ A K + + +KK++ ++E+ + G++ T K + E+R + ER+++
Sbjct: 945 AAAADKPKEEVNKQKKESDKQEESKENEGKEMTRKEKRKKIKEERNRRKKERKRE 999
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,444,284
Number of Sequences: 59808
Number of extensions: 511971
Number of successful extensions: 1795
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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