Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G03_e599_13.seq
(1545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56660.1 68414.m06516 expressed protein 36 0.054
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 34 0.22
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 32 0.88
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 31 1.5
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 30 3.6
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 30 3.6
At3g28770.1 68416.m03591 expressed protein 30 4.7
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 6.2
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 6.2
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 29 6.2
At4g02720.1 68417.m00368 expressed protein temporary automated f... 29 8.2
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel... 29 8.2
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 36.3 bits (80), Expect = 0.054
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +2
Query: 170 KELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEG-AVEERGIKLAEGTGRKRTIKP 346
+ELEE +KKE ++ G +K + K EE + E++ +K + G K ++
Sbjct: 167 EELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNEDKKVKGKKEKGEKGDLE- 225
Query: 347 AEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERR 463
EDE KK+++ + M ++ N++K+K S E +
Sbjct: 226 KEDEEKKKEHDETDQEMKE-KDSKKNKKKEKDESCAEEK 263
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 34.3 bits (75), Expect = 0.22
Identities = 26/93 (27%), Positives = 44/93 (47%)
Frame = +2
Query: 176 LEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAED 355
++E R + + EK+ + N+RK G V +R +K EG GR++ IK
Sbjct: 154 IDEERKWNLVSRVKEKKKVGNVRKVSVEGSNSYGNGRVSQR-VKKPEGFGRRKEIKEDVK 212
Query: 356 ELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLE 454
++ D + CGR + E + +RR K + E
Sbjct: 213 LNERYDCEHCGRRKKSSELESESRRGSKLVTGE 245
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 32.3 bits (70), Expect = 0.88
Identities = 27/97 (27%), Positives = 44/97 (45%)
Frame = +2
Query: 170 KELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPA 349
+E E +R RKK E+ + R+ ER + + EER K E RKR
Sbjct: 495 EEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVERKRR---E 551
Query: 350 EDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEER 460
E E K+ + +A R E++ +R+++ +ER
Sbjct: 552 EQERKRREEEARKREEERKREEEMAKRREQERQRKER 588
Score = 30.3 bits (65), Expect = 3.6
Identities = 25/103 (24%), Positives = 43/103 (41%)
Frame = +2
Query: 155 KKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKR 334
++ K E +R K E+ ++ E K EE EE K E +KR
Sbjct: 450 EEEARKREEAKRREEEEAKRREEEETERKKREEEEARKREEERKREEEEAKRREEERKKR 509
Query: 335 TIKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERR 463
+ AE K+E+ + M E++ R++K+ +E +R
Sbjct: 510 E-EEAEQARKREEEREKEEEMAKKREEE--RQRKEREEVERKR 549
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 31.5 bits (68), Expect = 1.5
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1598 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1658 SPTSPS 1663
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1605 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1664
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1665 SPTSPS 1670
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1671
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1672 SPTSPS 1677
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1619 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1678
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1679 SPTSPS 1684
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1626 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1686 SPTSPS 1691
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP + SP Y PS SP+ + P P P P P
Sbjct: 1570 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1630 SPTSPS 1635
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP + SP Y P+ SPS + P P P P P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1623 SPTSPS 1628
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/66 (24%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1633 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692
Query: 1508 SSXTPS 1525
S +P+
Sbjct: 1693 SPTSPA 1698
Score = 29.5 bits (63), Expect = 6.2
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP + SP Y P+ SP+ S P P P P P
Sbjct: 1556 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1615
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1616 SPTSPS 1621
Score = 29.5 bits (63), Expect = 6.2
Identities = 16/66 (24%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP++ SP Y P+ SP+ + P P P P P
Sbjct: 1654 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1713
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1714 SPTSPS 1719
Score = 29.5 bits (63), Expect = 6.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXP 1417
SPS+ SP Y PS SPS + + P
Sbjct: 1764 SPSYSPTSPSYSPSSPTYSPSSPYSSGASP 1793
Score = 29.1 bits (62), Expect = 8.2
Identities = 15/66 (22%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP++ SP Y P+ SP+ + P P P P P
Sbjct: 1591 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650
Query: 1508 SSXTPS 1525
S +P+
Sbjct: 1651 SPTSPA 1656
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/66 (24%), Positives = 22/66 (33%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SP++ SP Y P+ SP+ + P P P P P
Sbjct: 1647 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706
Query: 1508 SSXTPS 1525
S +PS
Sbjct: 1707 SPTSPS 1712
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/66 (24%), Positives = 21/66 (31%)
Frame = +2
Query: 1328 SPSFXXXSPFYXPSFSXXSPSXXFXXSSXPXXXXXXIXXXPXXPXPLPPRXXXPPXLLLX 1507
SPS+ SP Y P+ SP+ + P P P P P
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720
Query: 1508 SSXTPS 1525
+PS
Sbjct: 1721 GPTSPS 1726
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 30.3 bits (65), Expect = 3.6
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = +2
Query: 194 SSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKRTIKPAEDELKKED 373
SSP K++ +RK E+T + AE A +E + +R K AED+
Sbjct: 89 SSPHSKQV----FDLMRKQEKTRL--AELAAEKEHNEAIQASKDIERQRKLAEDQRNLVQ 142
Query: 374 YQACGR*MTTVEEDDCNRRKKKTTSLEERRYDGVL 478
QA + ED+ R++ +T + +RR++ L
Sbjct: 143 QQAQAKAQNLRYEDELARKRMQTDNEAQRRHNAEL 177
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 30.3 bits (65), Expect = 3.6
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 52 CVGQMIVLLQFLVKSTGASKKERSLTSKKK--QACREEKYYQGAGRKKTIKPAEEGAGEK 225
C+ +I LL + GAS+ + S+ K + +EK G G+ + A E G +
Sbjct: 223 CLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNE 282
Query: 226 RTIKPAE 246
R + P +
Sbjct: 283 RVLLPED 289
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.9 bits (64), Expect = 4.7
Identities = 18/103 (17%), Positives = 52/103 (50%)
Frame = +2
Query: 155 KKNTTKELEERRLSSPRKKELEKRGLSNLRKGERTIIKHAEEGAVEERGIKLAEGTGRKR 334
K+ KE ++ S RKKE +K+ + L K + + + +KL + K+
Sbjct: 1095 KEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKK 1154
Query: 335 TIKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEERR 463
K E++ + ++ ++ + ++++ ++++KK++ ++++
Sbjct: 1155 EKKENEEKSETKEIES-----SKSQKNEVDKKEKKSSKDQQKK 1192
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 29.5 bits (63), Expect = 6.2
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +2
Query: 155 KKNTTKELE-----ERRLSSPRK----KELEKRGLSNLRKGERTIIKHAEEGAVEERGIK 307
KK+ TKE+E E+ SS +K KE EK + K E+ K +E +EE
Sbjct: 457 KKSKTKEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKDKKEEVIEEVASP 516
Query: 308 LAEGTGRKRTIKPAEDELKKEDYQACGR*MTTVEEDDCNRRKKKTTSLEE 457
+E +K++ K E + ED A + ++ D ++ K + EE
Sbjct: 517 KSEKKKKKKS-KDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Frame = +1
Query: 235 KPAERR-KDYHQACGRRSCGRKRNQACGRNWKK--EDYQACGR*AEKR--------GLSS 381
KPAE R K + C RR C R +NQ C W DY+ R SS
Sbjct: 54 KPAELRWKWIEEYCWRRGCYRNQNQ-CNDKWDNLMRDYKKIREYERSRVESSFNTVTSSS 112
Query: 382 LWKIDDNRRR 411
WK+D R+
Sbjct: 113 YWKMDKTERK 122
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 29.5 bits (63), Expect = 6.2
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 9 KXDCNHSKXKKLFMVCWPNDCTAAVSCEVYGSVEERKIAYLEKKTSMSRRK 161
K S+ K L M V CE+ GS E + A+ K+T M R+K
Sbjct: 133 KAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKK 183
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 29.1 bits (62), Expect = 8.2
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = +1
Query: 91 KSTGASKKERSLTS--KKKQACREEKYYQGAGRKKTIKPAEEGAG----EKRTIKPAERR 252
KS+ KK RS S KK+ R+ KY AE A E+ T ++RR
Sbjct: 154 KSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASSSGEEEDTKSKSKRR 213
Query: 253 KDYHQACGRRSCGRKRNQACGRNWKKED 336
K + +RS G K + +ED
Sbjct: 214 KKSSDSSSKRSKGEKTKSGSDSDGTEED 241
>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC3) identical to
cyclic nucleotide and calmodulin-regulated ion channel
GI:4581201 from [Arabidopsis thaliana]
Length = 706
Score = 29.1 bits (62), Expect = 8.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -3
Query: 718 IKXYSNXDPDNSEKHSKLLIRXQQESRXGSYEKYFILIQLVVVGF 584
+ +SN + +N++K L + +S S+ K F+L+ +V + F
Sbjct: 53 LSVHSNKNKENNKKKKILRVMNPNDSYLQSWNKIFLLLSVVALAF 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,975,312
Number of Sequences: 28952
Number of extensions: 389487
Number of successful extensions: 1351
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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