Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G01_e583_13.seq
(1474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 100 6e-21
04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329 62 1e-09
09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577... 57 3e-08
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 45 2e-04
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568... 38 0.020
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 37 0.046
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 36 0.081
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 36 0.11
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 33 0.43
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 33 0.76
11_03_0142 + 10675764-10675991,10676533-10676943 32 1.3
12_01_0794 + 7285100-7285369,7285931-7286338 31 2.3
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 99.5 bits (237), Expect = 6e-21
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Frame = +2
Query: 293 KEVQCSHILVKHKXXXXXXX----XXXXXITRTKEEAIQIIKGYRTEIVNREVGFDEVAR 460
K+++ SHIL+KH+ T+++A + + R +IV E F++VA
Sbjct: 120 KKLRASHILIKHEGSRRKASWRDPEGVAISATTRDDAADLARALREKIVAGERKFEDVAT 179
Query: 461 LYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 625
SDC+SAKR GDLG F++G+MQK FE LK+G++S +V+T SGVHIILRTA
Sbjct: 180 EESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIILRTA 234
>04_01_0104 - 1087578-1087702,1088765-1088835,1091542-1092329
Length = 327
Score = 61.7 bits (143), Expect = 1e-09
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +2
Query: 503 GRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 625
G F + QMQKPFED F LK+G++S V+T SGVHIILRTA
Sbjct: 287 GTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 327
>09_04_0095 -
14556508-14556550,14556824-14556966,14557703-14557744,
14557940-14558049,14558369-14558519
Length = 162
Score = 57.2 bits (132), Expect = 3e-08
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = +2
Query: 452 VARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 616
+A+ YS+C S K+ GDLG F +G+M PF+DVAF+ +G S ++ G H IL
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGATSAPFKSTHGYHFIL 156
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 44.8 bits (101), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 113 DPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSS 292
D ++ AAQE LP GW K ++G +Y+ N+ T +QW++PG+P + + SS
Sbjct: 176 DSPVGQIKAAQE--LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSS 233
Score = 42.3 bits (95), Expect = 0.001
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
A SLPE W+ +STG YY N T+ +QWE P
Sbjct: 229 APPSSSLPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
>07_03_1741 +
29156076-29156316,29156554-29156676,29156784-29156875,
29157577-29157677,29157752-29157862,29158254-29158362,
29158589-29158639,29158758-29158838
Length = 302
Score = 37.9 bits (84), Expect = 0.020
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +2
Query: 383 EEAIQIIKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLK 562
E+ ++++ I+ ++A YS C S + G LG ++GQM FE+ AF
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164
Query: 563 IGQLSQLVETQSGVHII 613
+ ++ + +T+ G H++
Sbjct: 165 LNKVVR-CKTKFGWHLL 180
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 36.7 bits (81), Expect = 0.046
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LNDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
L+ R E +LP GW+ R TG ++Y++ T+ + WE P
Sbjct: 510 LSSSRYPEYNGRNPRTLPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 35.9 bits (79), Expect = 0.081
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 167 WQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSS 289
WQ S + G YY NK T+QS WEKP E D S+
Sbjct: 111 WQEHTS-ADGKKYYYNKKTRQSSWEKPAELMTPLERADAST 150
Score = 29.5 bits (63), Expect = 7.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 194 GMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSS 292
G YY NK TKQS+W P E + +S+
Sbjct: 160 GRKYYYNKVTKQSKWTIPDELKIARELAEKASN 192
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 35.5 bits (78), Expect = 0.11
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 256
A + SLP+ W+ +TG YY N T +Q+EKP P
Sbjct: 13 APDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 33.5 bits (73), Expect = 0.43
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Frame = +2
Query: 248 GSPAAVNEDEDNSSSKEVQCSHILVKHKXXXXXXXXXXXXITRTKEEAIQIIKGYRTEIV 427
G+ ++++E S S++V+ S L + K + ++ EAI+ ++ R E+
Sbjct: 542 GAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEA--VRASENEAIKKLEAARKEME 599
Query: 428 NREVGFDEVARLYSDCSSAKR--DGDLGRFKKGQMQKPFE 541
+ E+ +E + +AKR +G+L R+++ + +K E
Sbjct: 600 DMELATEEALKRAEMAEAAKRAVEGELRRWREKEQKKAAE 639
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 32.7 bits (71), Expect = 0.76
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 256
A + +LP+ W+ +TG Y+ N TK Q+++P +P
Sbjct: 17 APPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAP 56
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.9 bits (69), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 149 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
D LP W+ +G YYLN+ T + W +P
Sbjct: 63 DPLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 31.1 bits (67), Expect = 2.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 149 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
D LP W+ +G YYLN+ T + W +P
Sbjct: 77 DPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,773,663
Number of Sequences: 37544
Number of extensions: 620770
Number of successful extensions: 1136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4698853740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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