Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G01_e583_13.seq
(1474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 43 5e-04
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.009
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 37 0.036
SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.082
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 34 0.25
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.58
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16) 33 0.76
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 31 3.1
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 29 7.1
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 29 9.4
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 9.4
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 43.2 bits (97), Expect = 5e-04
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 116 PRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 256
P + E +LPEGW KSR G YY N T +S+W+ P P
Sbjct: 70 PEEDNAQLEFEANLPEGWIISKSRQHGRMYYFNTETAESRWQHPLIP 116
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 107 LNDPRKSEMAAAQEDS-LPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDN 283
+ +P S ++A++ LPEGW+ R+ + G T+Y++ T+ + W +P S + +
Sbjct: 167 VEEPSASARSSAEQPPPLPEGWEERQD-ANGRTFYIDHTTRTTTWVRPSSESTYQRELQR 225
Query: 284 SSS 292
S
Sbjct: 226 EES 228
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 37.1 bits (82), Expect = 0.036
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 143 QEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSS 292
+E + P GW R +Y N TK+SQWE P A D + S
Sbjct: 415 EESASPPGWSCHWDRKYKQYFYTNLETKKSQWEFPTDDAEPETSTDGAPS 464
Score = 33.9 bits (74), Expect = 0.33
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 110 NDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
ND E ++ + P WQA + ++ YY N+ T + QWE P
Sbjct: 98 NDKEHDEEPMEEDPNYP--WQACRDEASNCYYYWNQETNEVQWEMP 141
>SB_20015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 35.9 bits (79), Expect = 0.082
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 155 LPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
LP GW+ R++ S G TYY++ T+ + W++P
Sbjct: 415 LPHGWE-RRTDSRGRTYYVDHNTRTTTWQRP 444
Score = 32.3 bits (70), Expect = 1.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 116 PRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
P + E+ LP GW+ R G YY++ ++ + WE+P
Sbjct: 370 PPSARPLTGNEEPLPPGWEQRVDPH-GRIYYVDHNSRTTAWERP 412
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +2
Query: 113 DPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
DPR A+A + LP+GW+ R + + G+ Y+++ T+ + + P
Sbjct: 520 DPRTQTTASADKP-LPQGWEMRYT-NEGIPYFVDHNTRTTTFTDP 562
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 34.3 bits (75), Expect = 0.25
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 149 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
DS + W K+ S G TYY N T++S WEKP
Sbjct: 81 DSNGDIWLEHKT-SDGKTYYYNARTRESAWEKP 112
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 33.1 bits (72), Expect = 0.58
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 146 EDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSSKEVQCSHI 316
+D LP GW+ G TYY++ K++Q+E P AV +D S + S++
Sbjct: 327 DDELPYGWEKVDDPKYG-TYYIDHINKKTQFENP--VLAVRHSQDGLDSYDNDTSYM 380
>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
Length = 724
Score = 32.7 bits (71), Expect = 0.76
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 152 SLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSSKEVQCSH 313
SLP+GW A RS G+ YL++ T+ W +P + + + + + + C H
Sbjct: 51 SLPDGWLALNHRSGGI-IYLHRPTRVCTWSRPYHIGSGSVRKHDIPAAAIPCFH 103
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 140 AQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
+ E LP+GW +S TG YY + + +QWE+P
Sbjct: 1273 SNEYELPDGWMEVES-GTGSKYYWHVSSGTTQWERP 1307
>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1668
Score = 31.9 bits (69), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 146 EDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
E LP GW+ + G YY++ Y+ ++ W P
Sbjct: 8 EVPLPVGWEEARDTRDGRVYYIDHYSHRTTWIDP 41
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 30.7 bits (66), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 155 LPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
LP GW+ ++TG +Y + T+ + W P
Sbjct: 489 LPHGWEKAVDQTTGRIFYRDHNTQTTHWNPP 519
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 98 TILLNDPRKSEMAAAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
+I++N A + +LP W+ G YY + T+++QW+ P
Sbjct: 829 SIIINTEHHHTPAKVKPRALPPNWKTATDPQ-GKIYYYHTLTRRTQWDPP 877
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 30.3 bits (65), Expect = 4.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
++Q+ P+GW+ +S G+ YY+N T SQ E P
Sbjct: 358 SSQQTESPDGWEQVESPQYGI-YYVNHATGSSQREHP 393
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 29.5 bits (63), Expect = 7.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 542 LRTASASVPS*NGPNHHRV*QMSNQSTDARLHRTRPHDSQSRCDN 408
L +A VPS P+ + SN + AR R RPHD S D+
Sbjct: 168 LYSAQGRVPSEKEPSKAQKVAKSNPTQPARSLRKRPHDCDSTTDS 212
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 29.5 bits (63), Expect = 7.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 143 QEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
Q+ LP GW+ ++G ++++ T+ + W P
Sbjct: 4 QQHPLPNGWEMTVDPNSGRPFFIDHNTRTTTWTDP 38
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 29.1 bits (62), Expect = 9.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 606 ISFCVPPKGPIISILNITFSLFNIT-YINFQCSSKELCRDVAICID*LSPRGCTRV 770
++ C G + N T FN + Y +Q + K C+D+ C+D S GC ++
Sbjct: 835 VNECNSNNGGCDHLCNDTVGSFNCSCYQGYQLAGKTRCQDINECLD-FSTTGCQQL 889
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 149 DSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
DS P W+ K+ S G YY N TK+S W +P
Sbjct: 208 DSFP--WKEHKADS-GRVYYHNTETKESIWTEP 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,117,097
Number of Sequences: 59808
Number of extensions: 623041
Number of successful extensions: 1106
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4753799685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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