Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_G01_e583_13.seq
(1474 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 115 9e-26
At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase PPI... 59 6e-09
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 41 0.002
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 41 0.002
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 41 0.002
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 39 0.010
At3g59770.1 68416.m06670 sacI homology domain-containing protein... 36 0.051
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 34 0.21
At3g13225.1 68416.m01660 WW domain-containing protein contains P... 34 0.21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 33 0.48
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 33 0.48
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 33 0.48
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 32 1.1
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 32 1.1
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 32 1.1
At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase, p... 31 1.9
At5g43230.1 68418.m05283 hypothetical protein 29 7.7
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put... 29 7.7
At1g35580.2 68414.m04418 beta-fructofuranosidase, putative / inv... 29 7.7
At1g35580.1 68414.m04417 beta-fructofuranosidase, putative / inv... 29 7.7
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 115 bits (276), Expect = 9e-26
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Frame = +2
Query: 284 SSSKEVQCSHILVKHKXXXXXXX----XXXXXITRTKEEAIQIIKGYRTEIVNREVGFDE 451
+S +V+ SHIL+KH+ +T T+E A++ +K R +IV+ + F+E
Sbjct: 2 ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEE 61
Query: 452 VARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIILRTA 625
VA SDCSSAKR GDLG F +GQMQKPFE+ + LK+G +S +V+T SGVHII RTA
Sbjct: 62 VATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 119
>At1g26550.1 68414.m03235 peptidyl-prolyl cis-trans isomerase
PPIC-type family protein similar to SP|Q9Y237
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
(EC 5.2.1.8) (Rotamase Pin4) (PPIase Pin4) (Parvulin 14)
{Homo sapiens}; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 142
Score = 59.3 bits (137), Expect = 6e-09
Identities = 27/58 (46%), Positives = 37/58 (63%)
Frame = +2
Query: 443 FDEVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHIIL 616
F ++A YS+C S K+ GDLG F +G+M PF+DVAF +G S ++ G HIIL
Sbjct: 79 FAKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTPVGVTSAPFKSTHGYHIIL 136
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +2
Query: 449 EVARLYSDCSSAKRDGDLGRFKKGQMQKPFEDVAFTLKIGQLSQLVETQSGVHII 613
++A YS C S K G LG K GQM FE+ AF ++ Q+ + TQ G+H++
Sbjct: 126 DLAAEYSICPSKKDGGILGWVKLGQMVPEFEEAAFKAELNQVVR-CRTQFGLHLL 179
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 41.1 bits (92), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 140 AQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
A +LP GW K ++G TYY N++T QWE+P
Sbjct: 189 ANASTLPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 161 EGWQARKSRSTGMTYYLNKYTKQSQWEKPGS---PAAVNED 274
E W ++G Y+ N T SQWE P S PAA N +
Sbjct: 241 EEWIETFDEASGHKYFYNTRTHVSQWEPPASLQKPAATNSN 281
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 41.1 bits (92), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 140 AQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
A +LP GW K ++G TYY N++T QWE+P
Sbjct: 189 ANASTLPLGWVDAKDPASGATYYYNQHTGTCQWERP 224
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 161 EGWQARKSRSTGMTYYLNKYTKQSQWEKPGS---PAAVNED 274
E W ++G Y+ N T SQWE P S PAA N +
Sbjct: 241 EEWIETFDEASGHKYFYNTRTHVSQWEPPASLQKPAATNSN 281
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 38.7 bits (86), Expect = 0.010
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSP 256
A ++ +LP+ W+ STG+ YY N T +Q+E+P +P
Sbjct: 16 APEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAP 55
>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
WW domain-containing protein contains Pfam profiles
PF00397: WW domain, PF02383: SacI homology domain;
identical to cDNA SAC domain protein 9 (SAC9)
GI:31415734
Length = 1630
Score = 36.3 bits (80), Expect = 0.051
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 155 LPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
LP GW+ R TG +YY++ TK + W P
Sbjct: 510 LPPGWEKRADAVTGKSYYIDHNTKTTTWSHP 540
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.3 bits (75), Expect = 0.21
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEKPGSPA 259
A ++ +LP+ W+ TG Y+ N T +Q+E+P S A
Sbjct: 11 APEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSA 51
>At3g13225.1 68416.m01660 WW domain-containing protein contains Pfam
profile PF00397: WW domain
Length = 863
Score = 34.3 bits (75), Expect = 0.21
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 113 DPRKSEMAAAQEDS--LPEGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
DP K + + S LP WQA ST YY N T Q+ W +P
Sbjct: 815 DPEKQQKPDLTKLSANLPSEWQAYWDESTKKVYYGNTSTSQTSWTRP 861
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 33.1 bits (72), Expect = 0.48
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEK--PGSPAAVNEDEDNSSSKEVQ 304
A ++ +LP+ W+ TG Y+ N T +Q+EK P P + SSS +VQ
Sbjct: 13 APEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFSPAVSVSSSVQVQ 70
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 33.1 bits (72), Expect = 0.48
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEK--PGSPAAVNEDEDNSSSKEVQ 304
A ++ +LP+ W+ TG Y+ N T +Q+EK P P + SSS +VQ
Sbjct: 13 APEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFSPAVSVSSSVQVQ 70
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 33.1 bits (72), Expect = 0.48
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 AAQEDSLPEGWQARKSRSTGMTYYLNKYTKQSQWEK--PGSPAAVNEDEDNSSSKEVQ 304
A ++ +LP+ W+ TG Y+ N T +Q+EK P P + SSS +VQ
Sbjct: 13 APEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFSPAVSVSSSVQVQ 70
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 161 EGWQARKSRSTGMTYYLNKYTKQSQWEKP 247
+ W A KS + G+ YY N T QS +EKP
Sbjct: 157 DAWTAHKSEA-GVLYYYNSVTGQSTYEKP 184
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 167 WQARKSRSTGMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSS 289
W+ S G YY NK TKQS W P V E + +S
Sbjct: 250 WKEHSSPD-GRKYYYNKITKQSTWTMPEEMKIVREQAEIAS 289
Score = 30.3 bits (65), Expect = 3.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 194 GMTYYLNKYTKQSQWEKP 247
G Y+ NK TK+S WEKP
Sbjct: 217 GRKYFFNKRTKKSTWEKP 234
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 31.9 bits (69), Expect = 1.1
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 203 YYLNKYTKQSQWEKP 247
YY NK TKQS WEKP
Sbjct: 213 YYYNKRTKQSNWEKP 227
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 194 GMTYYLNKYTKQSQWEKPGSPAAVNEDEDNSSSK 295
G YY NK TK+S+W P E +S K
Sbjct: 251 GKKYYYNKVTKESKWTIPEDLKLAREQAQLASEK 284
>At5g58782.1 68418.m07363 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 289
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 466 VQTR--DFIEPDLTIHNLGAITFYNLYCFLLSASDFLFTPGRWSAAFFVLHKYVAAL 302
+QTR +F PDL I G N + + L+ ++F F+P W F K++ AL
Sbjct: 221 LQTRCTEFPSPDLLIRTSGEQRISNFFLWQLAYTEFFFSPVLWPD--FDKQKFIEAL 275
>At5g43230.1 68418.m05283 hypothetical protein
Length = 628
Score = 29.1 bits (62), Expect = 7.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 227 QSQWEKPGSPAAVNEDEDNSSSKEVQCSHILVKH 328
+ Q+E+ + N+DEDN+ ++ +C H + H
Sbjct: 425 EDQFEQKEDKSGRNKDEDNNDKEKPECEHFRLFH 458
>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
putative smilar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 881
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 536 FEDVAFTLKIGQ--LSQLVETQSGVHIILRTA*RPNYLHPQY---NIFIIQYNLYQFSV 697
F D +F K+G LS+ + G H+ A P Y+ P+Y N+ + ++Y F V
Sbjct: 706 FLDESFNAKLGGFGLSRAFDAAEGSHLNTAIAGTPGYVDPEYYTSNMLTEKSDVYSFGV 764
>At1g35580.2 68414.m04418 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 551
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 401 IKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQK 532
IK R +I R V E +RL+ DC DG LGR+ Q +K
Sbjct: 463 IKTGRPQIARRAVDLIE-SRLHRDCWPEYYDGKLGRYVGKQARK 505
>At1g35580.1 68414.m04417 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 551
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 401 IKGYRTEIVNREVGFDEVARLYSDCSSAKRDGDLGRFKKGQMQK 532
IK R +I R V E +RL+ DC DG LGR+ Q +K
Sbjct: 463 IKTGRPQIARRAVDLIE-SRLHRDCWPEYYDGKLGRYVGKQARK 505
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,529,902
Number of Sequences: 28952
Number of extensions: 450366
Number of successful extensions: 879
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3913268352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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