Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F12_e670_12.seq
         (1512 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.63 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.63 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   1.9  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    25   1.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 361 PLLVPDPTSPYRILHLLLHYPQTHPTHLTPRNR-NRNRHRILPP 233
           P ++  P +P+    + L  P  HP H  PRN    N H I  P
Sbjct: 718 PYMLQSPLTPHEAFDVKLP-PPPHPHHQPPRNPVGTNPHDINNP 760


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.63
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 361 PLLVPDPTSPYRILHLLLHYPQTHPTHLTPRNR-NRNRHRILPP 233
           P ++  P +P+    + L  P  HP H  PRN    N H I  P
Sbjct: 610 PYMLQSPLTPHEAFDVKLP-PPPHPHHQPPRNPVGTNPHDINNP 652


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 167 KTISRTKNLK-KKMTHTNRLMRKRRKNPMTVPITIPRRQMSRMRLGIVKKKMKNPVRTGR 343
           +T +R + L+ +K  HTN  + +RR+  M   + +  RQ+ ++     + K+K  ++  +
Sbjct: 228 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQI-KIWFQNRRMKLKKEIQAIK 286

Query: 344 IWNEK 358
             NE+
Sbjct: 287 ELNEQ 291


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 167 KTISRTKNLK-KKMTHTNRLMRKRRKNPMTVPITIPRRQMSRMRLGIVKKKMKNPVRTGR 343
           +T +R + L+ +K  HTN  + +RR+  M   + +  RQ+ ++     + K+K  ++  +
Sbjct: 10  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQI-KIWFQNRRMKLKKEIQAIK 68

Query: 344 IWNEK 358
             NE+
Sbjct: 69  ELNEQ 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,429
Number of Sequences: 336
Number of extensions: 2675
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45374275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)