Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F12_e670_12.seq
         (1512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    33   0.078
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    33   0.14 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.18 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.55 
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    31   0.55 
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    29   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   3.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   3.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   5.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   8.9  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    27   8.9  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE---NDR 777
           RD+HH+ S+ +R R+   N+  S D + HS  ++ ++  R+  RE   NDR
Sbjct: 173 RDRHHR-SNQDRSRERSDNEQHSSDKREHS--RRSYRNDRNNWRERTHNDR 220



 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRSS 783
           +++ H+  HH  ++     +S   D+++HS D++ H R    S  NDR++
Sbjct: 168 KERRHRDRHHRSNQDRSRERS---DNEQHSSDKREHSR---RSYRNDRNN 211


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 658 HHERDRKSEHNKS--SSKDSKRHSGDQKXHKRARDESRE 768
           HH R R+S+H +   S + S R +GD+  H+R   E  E
Sbjct: 31  HHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLE 69


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 640 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRSS 783
           +H +S     +R S  +++   D +    D + H+R R  SR  +RSS
Sbjct: 183 RHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSS 230



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 646 HKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRSS 783
           H++  H R   S  +   S+    HS       R+   SR+ DRSS
Sbjct: 110 HRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSS 155


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 637 DKHHKSSHHERDRKSEHNKSSSKDSKRHSG--DQKXHKRARDE 759
           ++H    HH      EH+K   KD + H G  D++ HK  +D+
Sbjct: 348 EEHEGPEHHRGPEDKEHHKGP-KDKEHHKGPKDKEHHKGPKDK 389



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +1

Query: 634 RDK-HHKS----SHHERDRKSEHNKSSSKDSKRHSG--DQKXHKRARDESRE 768
           +DK HHK      HH+  +  EH+K   KD + H G  D++ H+  +++  E
Sbjct: 378 KDKEHHKGPKDKEHHKGPKDKEHHKGP-KDKEHHKGPKDKEHHQGPKEKHNE 428



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE 768
           + KHHK  H +   K  H K    DS     ++  H    DE RE
Sbjct: 153 KGKHHKGKHAKGKGKKSHPKPED-DSVFFDDERPKHHEFDDEDRE 196


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 658 HHERDRKSEH---NKSSSKDSKRHSGDQKXHKRAR 753
           H E+ RK +H   ++S   DS RHS   + H R+R
Sbjct: 176 HREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRSR 210


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 652 SSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRS 780
           SS+ E+ +K   +  S +  K+HS ++K  K  + ++ EN+ S
Sbjct: 3   SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENS 45


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 640 KHHKSSHHERDRKSEHNKS-SSKDSKRHSGDQKXHKRARDESRENDRS 780
           KH + S HE   +S+H     SK +++   D+K  K     SR +  S
Sbjct: 596 KHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVS 643


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +1

Query: 637 DKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESR 765
           D HH S H  +  KS   K + K  + H  +    K    + +
Sbjct: 47  DTHHSSKHELKKLKSHFLKDTLKHKRNHHANSNNEKHENSDKK 89


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 302 IVKKKMKNPVRTGRIWNEKRPRKIKRSVSTTVKISTVNGREGTPD 436
           I+K  +K+ VR   I N   P+K KR++   +K        G+PD
Sbjct: 307 IIKLPLKDNVRPREIGNVNNPKKRKRALELALK----GSESGSPD 347


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 634  RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDE 759
            R  ++ S++  R+R SE N  +S D+KR    +   K  R +
Sbjct: 1484 RVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQD 1525


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 403 NLHGRRYAPFYLPRPLLVPDPTSPYRILHLLLHYPQ-THPTHLTPRNRNRNRH 248
           N H   Y    L    L+ D           +H+ Q +HPTH +P+N ++ R+
Sbjct: 80  NKHNEEYFRLLLAANALLSDKRRREEYDRFGIHWNQPSHPTHPSPQNWSQARY 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,442
Number of Sequences: 5004
Number of extensions: 41823
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)