Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_F12_e670_12.seq
(1512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 37 0.040
At5g63720.1 68418.m07998 hypothetical protein 36 0.053
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.070
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.070
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.070
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 36 0.092
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 36 0.092
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 34 0.21
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 33 0.37
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 32 0.86
At3g52220.1 68416.m05737 expressed protein 32 0.86
At3g25840.1 68416.m03219 protein kinase family protein contains ... 32 0.86
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 32 1.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 1.1
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 1.1
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 31 1.5
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 1.5
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 1.5
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 31 1.5
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 31 2.0
At5g19480.1 68418.m02321 expressed protein 31 2.0
At5g53440.1 68418.m06641 expressed protein 30 3.5
At5g12230.1 68418.m01435 expressed protein 30 3.5
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 4.6
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 29 6.1
At4g29100.1 68417.m04165 ethylene-responsive family protein cont... 29 8.0
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 29 8.0
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 29 8.0
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 29 8.0
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 8.0
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 8.0
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 29 8.0
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 36.7 bits (81), Expect = 0.040
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE 768
RD+HH+ H +R R+ + D + +R+RD RE
Sbjct: 100 RDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDRE 144
Score = 32.3 bits (70), Expect = 0.86
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
K + +RDR+ + ++ S+D R + R R + R+ DR
Sbjct: 60 KDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQRDR 102
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSS--SKDSKRHSGDQKXHKRARDESRENDRS 780
RD+ + H R R ++S S+ RH + + R+R S+ RS
Sbjct: 139 RDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRRS 189
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRS 780
K + + RD+ ++ KD R + +++RD R+ +RS
Sbjct: 52 KDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERS 95
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 36.3 bits (80), Expect = 0.053
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 643 HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESR 765
HH HH++++ S NK SK +H K KR ES+
Sbjct: 375 HHHHHHHDKEKPSAWNKLQSKFHHKHQEKSKERKRPMSESK 415
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 35.9 bits (79), Expect = 0.070
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKXHKRARDESRE 768
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 634 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKXHKRARDE 759
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 35.9 bits (79), Expect = 0.070
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKXHKRARDESRE 768
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 634 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKXHKRARDE 759
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 35.9 bits (79), Expect = 0.070
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKXHKRARDESRE 768
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 634 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKXHKRARDE 759
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 35.5 bits (78), Expect = 0.092
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 640 KHHKSSHHERDRKSEHNKSSSKDSKRHSG-DQKXHKRARDESRENDRSS 783
KH K + +D++S H++S + R S D+ H R R R+++ SS
Sbjct: 723 KHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSS 771
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRH----SGDQKXHKRARDESREND 774
+ KH SS E +S H SK S RH S D + R R D
Sbjct: 677 KHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKD 727
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 35.5 bits (78), Expect = 0.092
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 640 KHHKSSHHERDRKSEHNKSSSKDSKRHSG-DQKXHKRARDESRENDRSS 783
KH K + +D++S H++S + R S D+ H R R R+++ SS
Sbjct: 723 KHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSS 771
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRH----SGDQKXHKRARDESREND 774
+ KH SS E +S H SK S RH S D + R R D
Sbjct: 677 KHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKD 727
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 34.3 bits (75), Expect = 0.21
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 634 RDK-HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
RDK H + ERDRK ++ + K+ R ++ ++RD +E D+
Sbjct: 52 RDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKSRDRVKEKDK 100
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Frame = +1
Query: 634 RDKHHKSSHHERD------RKSEHNKSSSKD-SKRHSGDQKXHK---RARDESRENDRS 780
++K H+S E+D R +H + K+ ++ S D+ K R RD+ RE D+S
Sbjct: 33 KEKDHRSKDKEKDYDREKIRDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKS 91
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 664 ERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDRS 780
E+D++ E N+ ++++R + +K RAR + R + +S
Sbjct: 97 EKDKEKERNRHKDRENERDNEKEKDKDRARVKERASKKS 135
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 33.5 bits (73), Expect = 0.37
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQ-KXHKRARDESRENDRS 780
R+ + S +R+++ E ++ +D R S D+ + H R R++ R+ DRS
Sbjct: 323 RNSKERESSKDREKEQETSREHRRDYDRRSRDRDRHHDRDREQDRDYDRS 372
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
R + HH+RDR+ + + S R + R+RD R+ DR
Sbjct: 350 RRSRDRDRHHDRDREQDRDYDRSHSRSRRR--SRSRSRSRDRPRDYDR 395
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 32.3 bits (70), Expect = 0.86
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQK-XHKRARDESRENDR 777
++K HK +R+ K + +K SKD ++ ++K HK +D+ + ++
Sbjct: 16 KEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEK 64
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 32.3 bits (70), Expect = 0.86
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 640 KHHKSSHHERDRKSE-HNKSSSKDS---KRHSGDQKXHKRARDESRE 768
K K H+R K E H K S++DS K+H ++K KR D +
Sbjct: 191 KREKEERHDRREKRERHEKRSARDSDDRKKHKKEKKEKKRRHDSDSD 237
Score = 30.3 bits (65), Expect = 3.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGD 729
R++H K S + D + +H K + +RH D
Sbjct: 204 RERHEKRSARDSDDRKKHKKEKKEKKRRHDSD 235
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 32.3 bits (70), Expect = 0.86
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 637 DKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKXHKRARDESREND 774
+ HH+ H + K+S + R H H+ RD+ REN+
Sbjct: 8 ESHHRKHHRSSSSSDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENE 54
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
RD+ + SH RDR + + +D R ++ H R RD R+ D
Sbjct: 223 RDRR-RDSHRHRDRDYDRDYDMDRDHDRDYERERGHGRDRDRERDRD 268
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE 768
KS +E + E + S S K+ +K HKR+ DES E
Sbjct: 56 KSKKYEEVEEEEKSPSPSPSPKKSKESKKKHKRSSDESEE 95
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHK-RARDESRENDRSS 783
+SS H D+K E ++ +D +R + H+ R+RD R+ RSS
Sbjct: 40 RSSRHRGDKKKERDED--EDGRRSKRSRSHHRSRSRDRERDRHRSS 83
Score = 31.1 bits (67), Expect = 2.0
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 643 HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
HH+S +R+R + +D R K + +D R+ D+
Sbjct: 67 HHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRERDRDK 111
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARD 756
R H K S H R +KS ++ SS + ++ S +K KR RD
Sbjct: 892 RSSHKKHSKHRRTKKSSSSRYSSDEEQKESRREK--KRRRD 930
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
R++H S +R+R S K+S R ++ + RD+ R+ +R
Sbjct: 77 RERHRSSRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRER 124
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 397 HGRRYAPFYLPRPLLVPDPTSPYRILHLLLHYPQTHPTHLTPR-NRNRN 254
H RY P +P+ + P P P+ H YP H H R N+++N
Sbjct: 51 HWMRYPPVLMPQMMYAPPPPMPFSPYH---QYPNHHHFHHQSRGNKHQN 96
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 31.5 bits (68), Expect = 1.5
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 637 DKHHKSSHHERDRKSEHNKSSSKDSKRHS-GDQKXHKRARDESRENDRSS 783
D+ HKS E+D E+ + +DS G R+R E+D S
Sbjct: 510 DRRHKSHREEKDSHREYKQQRDRDSDEFDRGQSSLKSRSRSRMSEDDHRS 559
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 31.1 bits (67), Expect = 2.0
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +2
Query: 107 ISKGSLKTGAGPS*IPSPML----KTISRTKNLKKKMTHTNRLMRKRRKNPMTVPITIPR 274
+SK + G+G S P+ T++ N K + ++ + + +PM P+T P
Sbjct: 6 VSKPVMDNGSGDSDDDKPLAFKRNNTVASNSNQSKSNSQRSKAVPTTKVSPMRSPVTSPN 65
Query: 275 RQMSRMRLGIVKKKMKNPVRTGRIWNEKRPRKIKRSVSTTVK 400
+ IVK M P + + K P ++ + +TVK
Sbjct: 66 GTTPSNKTSIVKSSM--PSSSSKASPAKSP--LRNDMPSTVK 103
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHK-RARDESRENDR 777
KS ++DRK +K + + H + HK R +D+ ++ DR
Sbjct: 120 KSESKDKDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDR 163
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 640 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
+H K H +DR + +K +D K+ KR + + + D
Sbjct: 142 EHKKHKHKHKDRIKDKDKDKDRDKKKEKSGHHDKKRKNNGTEDAD 186
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 658 HHERDRKSEHNKSS---SKDSKRHSGDQKXHKRARDESRENDR 777
+HER+R ++++ S +D +R + ++R RD R+ DR
Sbjct: 300 YHERERNRDYDRESDRNERDRERTRDRDRDYERDRDRDRDRDR 342
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE 768
RD+ + H+R + ++ S+D R + H R +D SR+
Sbjct: 344 RDRDRRDYEHDRYHDRDWDRDRSRDRDRDHERDRTHDREKDRSRD 388
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKS-EHNKSSSKDSKR-HSGDQ-KXHKRARDESRENDRS 780
RD+ + +RDR+ EH++ +D R S D+ + H+R R RE DRS
Sbjct: 336 RDRD-RDRERDRDRRDYEHDRYHDRDWDRDRSRDRDRDHERDRTHDREKDRS 386
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 30.3 bits (65), Expect = 3.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
+ K HK ++DR+ + +K KD + K R +D++ +D
Sbjct: 128 KHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHD 174
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 649 KSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRENDR 777
KS +DR +H K +D + +K + +D S++ D+
Sbjct: 117 KSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDK 159
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 29.9 bits (64), Expect = 4.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRAR 753
R H K S H+ S H+KS SK S+ S + H+R R
Sbjct: 859 RSPHSKHSQHKNTLYSSHDKSRSKRSRSRS--RSPHRRHR 896
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles PF00612:
IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
regulator Bcl-2 protein) domain
Length = 1043
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 167 KTISRTKNLKKKMTHTNRL-MRKRRKNPMTVPIT 265
K SR K+L+KK++H + +R+R PM+V T
Sbjct: 1006 KLTSRVKSLEKKLSHKKKTQIRRRASKPMSVSPT 1039
>At4g29100.1 68417.m04165 ethylene-responsive family protein
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 407
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 316 LLLHYPQTHPTHLTPRNRNRNRHRILP-PFPH 224
L+ H P H+TP N N R R++P PFPH
Sbjct: 35 LMGHQQAPLPPHMTP-NNNYLRPRMMPTPFPH 65
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSE-DRYGRDGNRDDD 229
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSE-DRYGRDGNRDDD 229
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESREND 774
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSE-DRYGRDGNRDDD 229
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 637 DKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKXHKRARDESRE 768
++ + RD++ E + D +R ++ +RARD RE
Sbjct: 358 EERRREDQRARDKEREREREREHDRERERQRERERQRARDRERE 401
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDS----KRHSGDQKXHKRARDESREND 774
R++ + S + DR+ + S+D +R D + H+ ++ RE D
Sbjct: 442 RERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERD 492
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 634 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGD-QKXHKRARDESREND 774
R +HH +S + + S K S++H D +K K A E++
Sbjct: 873 RRRHHNNSDEDVSSDRDDRDESKKSSRKHGNDRKKSRKHANSPESESE 920
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,181,936
Number of Sequences: 28952
Number of extensions: 243586
Number of successful extensions: 1378
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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