Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F10_e654_12.seq
         (1579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   290   4e-79
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   287   3e-78
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    28   4.1  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  290 bits (711), Expect = 4e-79
 Identities = 146/244 (59%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
 Frame = +2

Query: 104 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 283
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 284 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 463
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 464 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPK 640
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 641 IQRLVTPVVLQRRRHRLALKKKTSGQNASQLRLITANY*HRERRNPRSXVKKE-IKXRRS 817
           IQRLVTP  LQ +RHR ALK++ + +N  +            +R   +  KKE +K RR+
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQ---LMAKRVAEAKQKKEVVKARRA 234

Query: 818 XSMR 829
            SM+
Sbjct: 235 SSMK 238


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  287 bits (704), Expect = 3e-78
 Identities = 143/244 (58%), Positives = 180/244 (73%), Gaps = 2/244 (0%)
 Frame = +2

Query: 104 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 283
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 284 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 463
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 464 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPK 640
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 641 IQRLVTPVVLQRRRHRLALKKKTSGQNASQLRLITANY*HRERRNPRSXVKKE-IKXRRS 817
           IQRLVTP  LQ +RHR ALK++ + +N  +            +R   +  K+E +K RR+
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQ---LMAKRVAEAKQKREVVKARRA 234

Query: 818 XSMR 829
            S++
Sbjct: 235 SSLK 238


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 587 LPAKEGKENAKPRYKAP-KIQRLVTPVVLQRRRHRLALKKKTSGQNAS 727
           LP++  K   K  YK P  IQR   PV+LQ R+  + + +  SG+ A+
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQ-RKDLIGIAETGSGKTAA 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,322,036
Number of Sequences: 5004
Number of extensions: 73826
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 889996126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)