Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F10_e654_12.seq
         (1579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   258   7e-69
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   256   3e-68
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    32   1.1  
02_01_0295 - 1973115-1973404,1974138-1974663                           31   1.9  
11_04_0329 - 16442298-16443734                                         29   7.6  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  258 bits (633), Expect = 7e-69
 Identities = 134/242 (55%), Positives = 167/242 (69%), Gaps = 8/242 (3%)
 Frame = +2

Query: 104 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 283
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 284 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 457
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 458 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 631
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 632 APKIQRLVTPVVLQRRRHRLALKK----KTSGQNASQLRLITANY*HRERRNPRSXVKKE 799
           APKIQRLVTP+ LQR+R R+A KK    K   + A   +L+      +  R   S  K+ 
Sbjct: 177 APKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRR 236

Query: 800 IK 805
            K
Sbjct: 237 SK 238


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  256 bits (628), Expect = 3e-68
 Identities = 133/242 (54%), Positives = 167/242 (69%), Gaps = 8/242 (3%)
 Frame = +2

Query: 104 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 283
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 284 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 457
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 458 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 631
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176

Query: 632 APKIQRLVTPVVLQRRRHRLALKKKTSGQNASQL----RLITANY*HRERRNPRSXVKKE 799
           APKIQRLVTP+ LQR+R R+A KKK   +  S+     +L+      +  R   S  K+ 
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRR 236

Query: 800 IK 805
            K
Sbjct: 237 SK 238


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 193 LFIEDTELVLIHHFK*LLTSRCRV*NVQLHDCDQSLRTLVPNXLQPGGXPL 41
           LF++ T  V +  F  L   RC V + +LH C Q+L  + P+  QP G  L
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQNL--VFPSEKQPYGHEL 124


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
 Frame = +2

Query: 341 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKR 514
           G S  +  + G ++    RG +   + S  AL  +  GA   PG      ++P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 515 ASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 604
            +KIRKL  +K ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -2

Query: 528 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDLRFLSPSRRG 358
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,225,843
Number of Sequences: 37544
Number of extensions: 582107
Number of successful extensions: 1242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5104927520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)