Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F10_e654_12.seq
         (1579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              278   1e-74
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.039
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     29   7.7  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  278 bits (681), Expect = 1e-74
 Identities = 138/213 (64%), Positives = 164/213 (76%), Gaps = 4/213 (1%)
 Frame = +2

Query: 206 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 385
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 386 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 565
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 566 RYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKTSGQNASQLRLIT 745
           +YV++R LP KEGK   K + KAPKIQRLVTPVVLQR+R RLALK+    Q A + +   
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKR----QRAQKCKQEA 174

Query: 746 ANY*HRERRNPRSXVKKE----IKXRRSXSMRD 832
           A+Y     +  +   +K     +K RR+ S+RD
Sbjct: 175 ADYAKLLAKRAKEAKEKRHEQLMKKRRASSLRD 207


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.039
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 352 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 182
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 542 LKKEDDVRRYVVKRLLPAKEGKENAKPRYK-APKIQRLVTPVVLQRRRHRLALKKKTSGQ 718
           +KKE ++ R   K     KE KEN K  +K   +I RL  P+    +++  A+KK     
Sbjct: 133 MKKEQEIERLTTKCKDLEKEDKENEKCIFKLQAEIMRL-RPLEKSTKKYEAAIKKSKLLF 191

Query: 719 NASQLRLITANY*HRERRNPRSXVKKEI 802
            A Q  +   N    + R   + +K ++
Sbjct: 192 EAMQTDVHIKNLQMAQLRQEVTELKSQV 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,221,335
Number of Sequences: 59808
Number of extensions: 646935
Number of successful extensions: 1802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5164621880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)