Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F10_e654_12.seq
         (1579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   268   1e-71
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    30   5.2  
AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in...    29   6.8  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    29   6.8  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    29   9.0  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    29   9.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  268 bits (656), Expect = 1e-71
 Identities = 129/200 (64%), Positives = 155/200 (77%)
 Frame = +2

Query: 104 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 283
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 284 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 463
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 464 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI 643
           I GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G      +  APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176

Query: 644 QRLVTPVVLQRRRHRLALKK 703
           QRL+TP  + R+++ L  K+
Sbjct: 177 QRLITPARIARKKYLLRQKR 196


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 551 EDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRL 652
           +DD RRY  K L    +   N KPRYK  K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 8 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 27/123 (21%), Positives = 51/123 (41%)
 Frame = +1

Query: 442 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 621
           C Q+C                 QA V   Q  Q   +++C S C +     Q+   +C+ 
Sbjct: 106 CQQQCQAQCTPMYNPPTTTTTTQAPVVQYQQCQPVCQQQCQSTCVQQ----QQPAAQCQP 161

Query: 622 QIQGA*NPEASNTGCSAAQTSSSSPQEENVWPKRKSAEADYR*LLAQRKKESKVXRQERD 801
           Q Q     +  N  C +  T++ +PQ   +  + + A+A  +    Q++ +S   +Q++ 
Sbjct: 162 QCQ-----QQCNVACDSPSTTTQAPQVIQIQLEIQQAQAQCQ-PQCQQQCQSSCVQQQQP 215

Query: 802 QTQ 810
            TQ
Sbjct: 216 STQ 218


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 27/123 (21%), Positives = 51/123 (41%)
 Frame = +1

Query: 442 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 621
           C Q+C                 QA V   Q  Q   +++C S C +     Q+   +C+ 
Sbjct: 106 CQQQCQAQCTPMYNPPTTTTTTQAPVVQYQQCQPVCQQQCQSTCVQQ----QQPAAQCQP 161

Query: 622 QIQGA*NPEASNTGCSAAQTSSSSPQEENVWPKRKSAEADYR*LLAQRKKESKVXRQERD 801
           Q Q     +  N  C +  T++ +PQ   +  + + A+A  +    Q++ +S   +Q++ 
Sbjct: 162 QCQ-----QQCNVACDSPSTTTQAPQVIQIQLEIQQAQAQCQ-PQCQQQCQSSCVQQQQP 215

Query: 802 QTQ 810
            TQ
Sbjct: 216 STQ 218


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 26/119 (21%), Positives = 49/119 (41%)
 Frame = +1

Query: 442 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 621
           C Q+C                 QA V   Q  Q   +++C S C +     Q+   +C+ 
Sbjct: 106 CQQQCQAQCTPMYNPPTTTTTTQAPVVQYQQCQPVCQQQCQSTCVQQ----QQPAAQCQP 161

Query: 622 QIQGA*NPEASNTGCSAAQTSSSSPQEENVWPKRKSAEADYR*LLAQRKKESKVXRQER 798
           Q Q     +  N  C +  T++ +PQ   +  + + A+A  +    Q+ + S V +Q++
Sbjct: 162 QCQ-----QQCNVACDSPSTTTQAPQVIQIQLEIQQAQAQCQPQCQQQCQSSCVQQQQQ 215


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 26/119 (21%), Positives = 49/119 (41%)
 Frame = +1

Query: 442 CPQRCTGNSWTDXXXXXXXXXXQACV*NPQIIQFKKRRRCASLCCKTPFTCQRGQGKCKT 621
           C Q+C                 QA V   Q  Q   +++C S C +     Q+   +C+ 
Sbjct: 106 CQQQCQAQCTPMYNPPTTTTTTQAPVVQYQQCQPVCQQQCQSTCVQQ----QQPAAQCQP 161

Query: 622 QIQGA*NPEASNTGCSAAQTSSSSPQEENVWPKRKSAEADYR*LLAQRKKESKVXRQER 798
           Q Q     +  N  C +  T++ +PQ   +  + + A+A  +    Q+ + S V +Q++
Sbjct: 162 QCQ-----QQCNVACDSPSTTTQAPQVIQIQLEIQQAQAQCQPQCQQQCQSSCVQQQQQ 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,847,179
Number of Sequences: 27780
Number of extensions: 456318
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4566715120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)