Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F09_e646_11.seq
         (1567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   8.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   8.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 231 EASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR 332
           EA + +SGK +  V     G S ++  T  APL+
Sbjct: 296 EAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLK 329


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 157 FMHSAERPVVRSYHPRDY 210
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 157 FMHSAERPVVRSYHPRDY 210
           F    E P  R+Y+P DY
Sbjct: 310 FFRELEAPCPRNYNPADY 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,335
Number of Sequences: 336
Number of extensions: 4319
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 47217925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)