Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F09_e646_11.seq
         (1567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1086 + 23858419-23859423,23859527-23859610                       35   0.20 
03_04_0029 - 16610182-16611753                                         32   1.4  
03_05_0751 - 27389910-27392105                                         30   4.3  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   7.6  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    29   7.6  

>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
 Frame = +3

Query: 87  LLMARRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 251
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 252 GKDMLTVEPRESGGS--KQSDFTSRAPLR*GATSKPIRISEIGAVGSL 389
           G   L V   E+GG+  K+   T+   L  GA    +R  E GAV  L
Sbjct: 189 GAIPLLVSLLETGGARGKKDAATALYALCSGARENRLRAVEAGAVRPL 236


>03_04_0029 - 16610182-16611753
          Length = 523

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 400 GARVKEPTAPISEIRMGFDVAPHRSGARLVKSLCLEPPDSRGSTVSISLP 251
           GA    P AP S    G+D +PH    R  KS+ L+   SR +T+  ++P
Sbjct: 299 GATATSPVAPFSASPPGYDFSPHL--LRYAKSINLDLRISRAATLDDAVP 346


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 174 AAGGAKLPSAG--LCLNASKAEASLAESGKDMLTVEPRESGGSKQSDFTSRAP 326
           A G AK   AG  + LN SKAE    +  +    ++  E   SKQS F S  P
Sbjct: 246 AGGVAKRQEAGKAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCSDEP 298


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 147 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 245
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -2

Query: 495 PSTTPRQERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSEWASTSRLTGVERD 316
           PST PR +R S     EP     V+P  +  V     N P  SP S   +    T V+ D
Sbjct: 337 PSTIPRPDRVSPWKI-EPASSPPVNPLPLSRVKRPRPNAPPASPESPILTKEAATKVDTD 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,555,710
Number of Sequences: 37544
Number of extensions: 594057
Number of successful extensions: 1507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5058519088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)