Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F09_e646_11.seq
         (1567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    29   6.8  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    29   6.8  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    29   9.0  

>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 477 QERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSE 355
           +ER SST  S    R +VSPDR     H  +  PRR+P+ +
Sbjct: 282 RERSSSTTTSS--RRRQVSPDRSEQRRHRDEPPPRRAPQEQ 320


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 477 QERKSSTDYSEPRHRTEVSPDRIGAVAHALKNRPRRSPRSE 355
           +ER SST  S    R +VSPDR     H  +  PRR+P+ +
Sbjct: 390 RERSSSTTTSS--RRRQVSPDRSEQRRHRDEPPPRRAPQEQ 428


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -2

Query: 528 SLNRSQHDAALPSTTPRQERKSST--DYSEPRHRTEV-SPDRIGAVAHALKNR--PRRSP 364
           S +RS+        +P +ER+ S   D   PR R+   S DR  +       R  PRRSP
Sbjct: 68  SRSRSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSP 127

Query: 363 RSEWASTSRLTGVER 319
                  SRL G ER
Sbjct: 128 GRRSPPRSRLPGPER 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,810,582
Number of Sequences: 27780
Number of extensions: 436884
Number of successful extensions: 1094
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)