Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F09_e646_11.seq
         (1567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 528 SLNRSQHDAALPSTTPRQERKSST 457
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = -3

Query: 407  EPWXXXXXXXXXXXXDPNGLRRRASPEWSATSKVT 303
            EP                GL  RASP +S TS  T
Sbjct: 901  EPTSAAFAQGFATAASSPGLLERASPAFSGTSSPT 935


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 231 EASLAESGKDMLTVEPRESGGSKQSDFTSRAPLR*GATSKP 353
           EA + +SGK +  V     G S ++  T  APL  GA  +P
Sbjct: 276 EARVEDSGKYLCIVNNSVGGESVETVLTVTAPL--GAEIEP 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,963
Number of Sequences: 438
Number of extensions: 5306
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55027500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)