Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   217   3e-57
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   217   3e-57
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   7.0  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  217 bits (531), Expect = 3e-57
 Identities = 108/175 (61%), Positives = 130/175 (74%)
 Frame = +1

Query: 133 QKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 312
           QKL E+ D+ +LR+F EKRMG+EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   R
Sbjct: 13  QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72

Query: 313 VRLLMSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRR 492
           VRLL+  GH CYRPRRDGERKRKSV GCIV  +L+VLAL IV++G Q+IPGLTD  VP+R
Sbjct: 73  VRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKR 132

Query: 493 LGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           LGPKRASKIR+ FNL K       ++     +PK+  K   P TKAPKIQRLV+P
Sbjct: 133 LGPKRASKIRRFFNLSKEDDVRQFVI-RREVVPKKEGK--KPYTKAPKIQRLVTP 184



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 96  MKLNVSYPATGMSEVI 143
           MKLN+SYPA G  ++I
Sbjct: 1   MKLNISYPANGTQKLI 16


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  217 bits (530), Expect = 3e-57
 Identities = 107/175 (61%), Positives = 130/175 (74%)
 Frame = +1

Query: 133 QKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 312
           QKL E+ D+ +LR+F EKRMG+EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   R
Sbjct: 13  QKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHR 72

Query: 313 VRLLMSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRR 492
           VRLL+  GH CYRPRRDGERKRKSV GCIV  +L+VLAL I+++G Q+IPGLTD  VP+R
Sbjct: 73  VRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKR 132

Query: 493 LGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           LGPKRASKIR+ FNL K       ++     +PK+  K   P TKAPKIQRLV+P
Sbjct: 133 LGPKRASKIRRFFNLSKEDDVRQFVI-RREVVPKKEGK--KPYTKAPKIQRLVTP 184



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 96  MKLNVSYPATGMSEVI 143
           MKLN+SYPA G  ++I
Sbjct: 1   MKLNISYPANGTQKLI 16


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 454 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKRRRCAVAML 570
           EI G  D ++P RL  K+ ++     N K+R + A + +
Sbjct: 143 EILGSIDQDIPERLSTKKGNRSHTTSNAKRRSQKAASSI 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,060
Number of Sequences: 5004
Number of extensions: 57251
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 882067430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)