Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   200   2e-51
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   198   1e-50
01_05_0130 - 18434678-18435688                                         31   3.3  
11_04_0329 - 16442298-16443734                                         30   5.7  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  200 bits (488), Expect = 2e-51
 Identities = 105/178 (58%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
 Frame = +1

Query: 130 CQKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 309
           CQK  E+ D+ KLR FY+KR+ +EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ 
Sbjct: 12  CQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSG 71

Query: 310 RVRLLMSKGHSCYR--PRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 483
           RVRLL+ +G  C+R   RRDGER+RKSV GCIV  +LSV+ LVIV+KG  ++PGLTD E 
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEK 131

Query: 484 PRRLGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           PR  GPKRASKIRKLFNL K     V    N  Y      K     +KAPKIQRLV+P
Sbjct: 132 PRMRGPKRASKIRKLFNLAKDD--DVRKYVNT-YRRTFTTKNGKKVSKAPKIQRLVTP 186


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  198 bits (483), Expect = 1e-50
 Identities = 104/178 (58%), Positives = 125/178 (70%), Gaps = 2/178 (1%)
 Frame = +1

Query: 130 CQKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNS 309
           CQK  E+ D+ KLR F++KR+ +EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  
Sbjct: 12  CQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAG 71

Query: 310 RVRLLMSKGHSCYR--PRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEV 483
           RVRLL+ +G  C+R   RRDGER+RKSV GCIV  +LSV+ LVIV+KG  ++PGLTD E 
Sbjct: 72  RVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEK 131

Query: 484 PRRLGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           PR  GPKRASKIRKLFNL K     V    N  Y      K     +KAPKIQRLV+P
Sbjct: 132 PRMRGPKRASKIRKLFNLSKDD--DVRKYVNT-YRRTFTTKNGKKVSKAPKIQRLVTP 186


>01_05_0130 - 18434678-18435688
          Length = 336

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 587 R*KAFYNIATAHRLLFFKLNNLRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERL 408
           R +AF+ + T HRL  F L + R+    L  R     P+ SP +  +P   +T A   RL
Sbjct: 42  RSRAFHALLTPHRLDAFFLLSPRLAFHPLSRRLLPAPPAASPPVVSSPSHLVTAASLLRL 101


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = -3

Query: 521 RILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPXTDLRFLSPSRRG 351
           R+L A       G    +   + CAP   M       LAS+  P + LRF S  RRG
Sbjct: 56  RLLAAHAALSPPGAVLRLLASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,746,787
Number of Sequences: 37544
Number of extensions: 432748
Number of successful extensions: 947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5058519088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)