Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              213   3e-55
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.051
SB_32828| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  213 bits (520), Expect = 3e-55
 Identities = 102/153 (66%), Positives = 119/153 (77%)
 Frame = +1

Query: 199 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 378
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 379 KSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKRRRCA 558
           KSV GCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL K     
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 559 VAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
             ++     LP++  K     +KAPKIQRLV+P
Sbjct: 122 QYVIRRP--LPEKEGKKAK--SKAPKIQRLVTP 150


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.051
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 345 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFTAHTLFIE 175
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_32828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 175 RYGACAHPPLQITSDIPVAGYETFNFMTAISPLL 74
           R+G C H P       PV  Y+T+NF +A  P+L
Sbjct: 28  RFGGCVHTPCIPFRYRPVLPYDTYNFASA-QPIL 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,626,267
Number of Sequences: 59808
Number of extensions: 484857
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5117670772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)