Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   229   5e-60

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  229 bits (559), Expect = 5e-60
 Identities = 113/175 (64%), Positives = 133/175 (76%)
 Frame = +1

Query: 133 QKLFEVVDEHKLRIFYEKRMGREVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 312
           QK FEV +E KLR+F+EKRM +EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN R
Sbjct: 13  QKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGR 72

Query: 313 VRLLMSKGHSCYRPRRDGERKRKSVXGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRR 492
           VRLL+ KG SCYR R++GERKRKSV GCIVDAN+S L+LVIV+KG  EI GLTD  +PR+
Sbjct: 73  VRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRK 132

Query: 493 LGPKRASKIRKLFNLKKRRRCAVAML*NAFYLPKRAXKMXNPDTKAPKIQRLVSP 657
           LGPKRASKIRKLFNL K       ++ +    P    K     T APKIQRL++P
Sbjct: 133 LGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTK-----TIAPKIQRLITP 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,471
Number of Sequences: 27780
Number of extensions: 348542
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)