Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_F08_e638_12.seq
         (1567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   2.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   7.2  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 118 RQRVCQKLFEVVDEHKLRIFYEKRMGR--EVDADLL 219
           ++R CQ  F+        +  EKR GR  EVD DL+
Sbjct: 39  KERQCQNWFDKFRSGDFSLKDEKRSGRPVEVDDDLI 74


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 45  WHXPGLQXFGSRGLIAVMKLNVSYPATGMSEVI 143
           W+ P +  F  + +  +++ N  YP     EVI
Sbjct: 100 WNFPMISVFSRQDIETIIRRNSRYPLRPPQEVI 132


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 341 EWPFDIKRRTRLLVRTPCFI 282
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 341 EWPFDIKRRTRLLVRTPCFI 282
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,125
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55027500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)